Literature DB >> 30503240

Tales of Detailed Poly(A) Tails.

Angela L Nicholson1, Amy E Pasquinelli2.   

Abstract

Poly(A) tails are non-templated additions of adenosines at the 3' ends of most eukaryotic mRNAs. In the nucleus, these RNAs are co-transcriptionally cleaved at a poly(A) site and then polyadenylated before being exported to the cytoplasm. In the cytoplasm, poly(A) tails play pivotal roles in the translation and stability of the mRNA. One challenge in studying poly(A) tails is that they are difficult to sequence and accurately measure. However, recent advances in sequencing technology, computational algorithms, and other assays have enabled a more detailed look at poly(A) tail length genome-wide throughout many developmental stages and organisms. With the help of these advances, our understanding of poly(A) tail length has evolved over the past 5 years with the recognition that highly expressed genes can have short poly(A) tails and the elucidation of the seemingly contradictory roles for poly(A)-binding protein (PABP) in facilitating both protection and deadenylation.
Copyright © 2018. Published by Elsevier Ltd.

Entities:  

Keywords:  deadenylation; poly(A) tail; poly(A)-binding protein; translation

Mesh:

Substances:

Year:  2018        PMID: 30503240      PMCID: PMC7083203          DOI: 10.1016/j.tcb.2018.11.002

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  59 in total

1.  3'-Terminal addition to HeLa cell nuclear and cytoplasmic poly (A).

Authors:  S G Sawicki; W Jelinek; J E Darnell
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

2.  TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications.

Authors:  Hyeshik Chang; Jaechul Lim; Minju Ha; V Narry Kim
Journal:  Mol Cell       Date:  2014-02-27       Impact factor: 17.970

Review 3.  The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.

Authors:  Guramrit Singh; Gabriel Pratt; Gene W Yeo; Melissa J Moore
Journal:  Annu Rev Biochem       Date:  2015-03-11       Impact factor: 23.643

4.  Polyadenylic acid segment in mRNA becomes shorter with age.

Authors:  D Sheiness; J E Darnell
Journal:  Nat New Biol       Date:  1973-02-28

5.  mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.

Authors:  Stephen W Eichhorn; Alexander O Subtelny; Iva Kronja; Jamie C Kwasnieski; Terry L Orr-Weaver; David P Bartel
Journal:  Elife       Date:  2016-07-30       Impact factor: 8.140

6.  Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs.

Authors:  Xuezhong Cai; Curt H Hagedorn; Bryan R Cullen
Journal:  RNA       Date:  2004-11-03       Impact factor: 4.942

7.  Poly(A) tail length control is caused by termination of processive synthesis.

Authors:  E Wahle
Journal:  J Biol Chem       Date:  1995-02-10       Impact factor: 5.157

8.  Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation.

Authors:  C E Brown; A B Sachs
Journal:  Mol Cell Biol       Date:  1998-11       Impact factor: 4.272

9.  Short poly(A) tails are a conserved feature of highly expressed genes.

Authors:  Sarah Azoubel Lima; Laura B Chipman; Angela L Nicholson; Ying-Hsin Chen; Brian A Yee; Gene W Yeo; Jeff Coller; Amy E Pasquinelli
Journal:  Nat Struct Mol Biol       Date:  2017-11-06       Impact factor: 15.369

Review 10.  Poly(A) polymerase (PAP) diversity in gene expression--star-PAP vs canonical PAP.

Authors:  Rakesh S Laishram
Journal:  FEBS Lett       Date:  2014-05-27       Impact factor: 4.124

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  46 in total

1.  The internal ribosome entry site of the Dengue virus mRNA is active when cap-dependent translation initiation is inhibited.

Authors:  Leandro Fernández-García; Jenniffer Angulo; Hade Ramos; Aldo Barrera; Karla Pino; Jorge Vera-Otarola; Marcelo López-Lastra
Journal:  J Virol       Date:  2020-12-09       Impact factor: 5.103

2.  Expression of Separate Heterologous Proteins from the Rotavirus NSP3 Genome Segment Using a Translational 2A Stop-Restart Element.

Authors:  Asha A Philip; John T Patton
Journal:  J Virol       Date:  2020-08-31       Impact factor: 5.103

3.  Dual Leucine Zipper Kinase Regulates Dscam Expression through a Noncanonical Function of the Cytoplasmic Poly(A)-Binding Protein.

Authors:  Monika Singh; Bing Ye; Jung Hwan Kim
Journal:  J Neurosci       Date:  2022-06-28       Impact factor: 6.709

4.  Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.

Authors:  Ying Chen; Elena Khazina; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

Review 5.  Connections between 3' end processing and DNA damage response: Ten years later.

Authors:  Michael Robert Murphy; Frida Esther Kleiman
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-10-28       Impact factor: 9.957

6.  PABPN1L mediates cytoplasmic mRNA decay as a placeholder during the maternal-to-zygotic transition.

Authors:  Long-Wen Zhao; Ye-Zhang Zhu; Hao Chen; Yun-Wen Wu; Shuai-Bo Pi; Lu Chen; Li Shen; Heng-Yu Fan
Journal:  EMBO Rep       Date:  2020-06-17       Impact factor: 8.807

Review 7.  LARP1 and LARP4: up close with PABP for mRNA 3' poly(A) protection and stabilization.

Authors:  Sandy Mattijssen; Guennadi Kozlov; Bruno D Fonseca; Kalle Gehring; Richard J Maraia
Journal:  RNA Biol       Date:  2021-01-31       Impact factor: 4.652

8.  The isolated La-module of LARP1 mediates 3' poly(A) protection and mRNA stabilization, dependent on its intrinsic PAM2 binding to PABPC1.

Authors:  Sandy Mattijssen; Guennadi Kozlov; Sergei Gaidamakov; Amitabh Ranjan; Bruno D Fonseca; Kalle Gehring; Richard J Maraia
Journal:  RNA Biol       Date:  2020-12-23       Impact factor: 4.652

9.  Identification of nucleotide sequences and some proteins involved in polyadenylation of RNA transcribed by Pol III from SINEs.

Authors:  Ilia G Ustyantsev; Olga R Borodulina; Dmitri A Kramerov
Journal:  RNA Biol       Date:  2020-12-11       Impact factor: 4.652

10.  Enhanced Prodigiosin Production in Serratia marcescens JNB5-1 by Introduction of a Polynucleotide Fragment into the pigN 3' Untranslated Region and Disulfide Bonds into O-Methyl Transferase (PigF).

Authors:  Yang Sun; Lijun Wang; Tolbert Osire; Weilai Fu; Ganfeng Yi; Shang-Tian Yang; Taowei Yang; Zhiming Rao
Journal:  Appl Environ Microbiol       Date:  2021-08-26       Impact factor: 4.792

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