| Literature DB >> 27428001 |
Jiangbo Liu1,2, Wei Li2, Miao Deng1, Dechun Liu1, Qingyong Ma2, Xiaoshan Feng3.
Abstract
BACKGROUND: Whether increased expression of the tumor suppressor protein p53 indicates a p53 gene mutation in hepatocellular carcinoma (HCC) remains unclear. We conducted a meta-analysis to determine whether p53 protein overexpression detected by immunohistochemistry (IHC) offers a diagnostic prediction for p53 gene mutations in HCC patients.Entities:
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Year: 2016 PMID: 27428001 PMCID: PMC4948819 DOI: 10.1371/journal.pone.0159636
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Flow chart of the selection process for the included studies.
The analytical results of correlations between p53 mutations and p53 overexpression.
| Reference | Country | Potential mutagen | Sample size | TP | FP | FN | TN | IHC cut-off/Exon | Analytical method (antibody/gene) | QUADAS-2 |
|---|---|---|---|---|---|---|---|---|---|---|
| An et al. 2001 [ | Japan | HCV | 11 of 41 | 1 | 7 | 0 | 3 | NA/exons 5–8 | IHC (DO-7)/PCR-DNA sequencing | 11 |
| Andersson et al. 1995 [ | Denmark | alpha-particles | 18 of 36 | 0 | 2 | 1 | 15 | 1%/exons 5,7,8 | IHC (DO-7)/PCR-DGGE, DNA sequencing | 9 |
| Anzola et al. 2004 [ | Spain | HCV, alcohol | 117 from 78 | 4 | 23 | 8 | 82 | 10%/exons 4–8 | IHC (DO-7)/PCR-SSCP, DNA sequencing | 11 |
| Boix-Ferrero et al. 1999 [ | Spain | HCV, alcohol | 70 of 129 | 1 | 13 | 1 | 55 | 10%/exons 5–8 | IHC (Bp 53–11)/PCR-DNA sequencing | 11 |
| Bourdon et al. 1995 [ | France | HBV | 20 | 5 | 5 | 1 | 9 | NA/exons 2–11 | IHC (PAb1801)/PCR-DNA sequencing | 10 |
| Challen et al. 1992 [ | UK | –* | 19 | 1 | 0 | 1 | 17 | 10%/exons 5–8 | IHC (–)/PCR-DNA sequencing | 9 |
| Chen et al. 2003 [ | China | HBV | 33 | 16 | 5 | 0 | 12 | NA/exons 2–8 | IHC (Santa)/PCR-DNA sequencing | 10 |
| Cheung et al. 2006 [ | China | HBV | 55 | 17 | 11 | 9 | 18 | NA/exons 4–9 | IHC (DO-7)/PCR-DNA sequencing | 11 |
| De Benedetti et al. 1996 [ | USA | Contraceptive | 10 of 11 | 1 | 2 | 0 | 7 | 1%/exons 4–9 | IHC (–)/PCR-DNA sequencing | 9 |
| Greenblatt et al. 1997 [ | China | HBV | 16 | 1 | 5 | 2 | 8 | 1%/exons 4–8 | IHC (CM-1)/PCR-DNA sequencing | 9 |
| Gross-Goupil et al. 2003 [ | France | HBV, HCV | 18 | 0 | 4 | 2 | 12 | 10%/exons 2–11 | IHC (DO-7)/PCR-DNA sequencing | 10 |
| Hsia et al. 2000 [ | China | –* | 28 | 16 | 3 | 1 | 8 | 10%/exons 5–8 | IHC (–)/PCR-DNA sequencing | 9 |
| Hsu et al. 1993 [ | China | HBV, HCV | 78 of 184 | 30 | 9 | 10 | 29 | 10%/exons 2–11 | IHC (DO-7)/PCR-SSCP, DNA sequencing | 9 |
| Jablkowski et al. 2005 [ | Poland | HBV | 9 of 20 | 4 | 1 | 1 | 3 | 50%/exons 5–8 | IHC (DO-7)/PCR-DNA sequencing | 10 |
| Kang et al. 1998 [ | Korea | HBV | 8 of 13 | 2 | 2 | 0 | 4 | 20%/exons 5–8 | IHC (DO-7)/PCR-SSCP, DNA sequencing | 9 |
| Kubicka et al. 1995 [ | Germany | HBV | 20 | 1 | 0 | 1 | 18 | 30%/exons 5–8 | IHC (PAb1801/PAb240) /PCR-DNA sequencing | 9 |
| Lee et al. 2002 [ | Korea | HBV | 36 from 34 | 6 | 9 | 1 | 20 | 5%/exons 4–10 | IHC (BP53-12)/PCR-SSCP, DNA sequencing | 10 |
| Lunn et al. 1997 [ | China | HBV, AFB1 | 105 | 22 | 13 | 7 | 63 | 5%/exons 5–9 | IHC (DO-1/Ab-6)/PCR-SSCP, DNA sequencing | 9 |
| Luo et al. 2001 [ | China | – | 21 | 6 | 5 | 3 | 7 | 10%/exons 5–8 | IHC (DO-7)/PCR-SSCP | 10 |
| Mitsumoto et al. 2004 [ | Japan | HCV | 50 | 13 | 1 | 8 | 28 | 10%/– | IHC (DO-7)/Yeast p53 Functional Assay, DNA sequencing | 9 |
| Mohamed et al. 2008 [ | Egypt | HBV, HCV | 30 | 7 | 9 | 4 | 10 | 10%/exons 5–8 | IHC (DO-7)/PCR-SSCP, DNA sequencing | 11 |
| Okada et al. 2003 [ | Japan | HCV | 10 of 22 | 5 | 1 | 0 | 4 | 10%/exons 5–9 | IHC (DO-7)/PCR-DNA sequencing | 10 |
| Peng et al. 1998 [ | China | – | 70 | 21 | 9 | 2 | 38 | 5%/exon 7 | IHC (DO-7)/RFLP | 9 |
| Qi et al. 2015 [ | China | HBV, AFB1 | 397 | 208 | 58 | 15 | 116 | 25%/exons 1–11 | IHC (Abcam)/PCR-DNA sequencing | 11 |
| Qin et al. 1998 [ | China | HBV | 26 of 31 | 5 | 1 | 1 | 19 | NA/exons 5–9 | IHC (PAb1801/PAb240) /PCR-DNA sequencing | 9 |
| Rashid et al. 1999 [ | China | HBV | 24 | 10 | 3 | 2 | 9 | NA/exons 2–9 | IHC (DO-7)/PCR-DNA sequencing | 11 |
| Ryder et al. 1996 [ | Germany | HBV, HCV | 37 of 38 | 15 | 3 | 2 | 17 | 80%/exons 5–8 | IHC (DO-1)/PCR-SSCP, DNA sequencing | 10 |
| Sanefuji et al. 2010 [ | Japan | HCV | 79 of 82 | 13 | 34 | 0 | 32 | 10%/exons 5–8 | IHC (DO-7)/PCR-DNA sequencing | 11 |
| Shieh et al. 1993 [ | USA | HBV, HCV | 18 | 1 | 0 | 0 | 17 | NA/exon 7 | IHC (PAb1801)/PCR-DNA sequencing | 9 |
| Soini et al. 1996 [ | Mexico | AFB1 | 14 of 21 | 2 | 4 | 1 | 7 | 1%/exon 7 | IHC (CM-1)/PCR-DNA sequencing | 9 |
| Stern et al. 2001 [ | China | HBV, AFB1 | 48 of 64 | 15 | 15 | 3 | 15 | NA/exon 7 | IHC (CM-1)/PCR-DNA sequencing | 10 |
| Szymańska et al. 2004 [ | Gambia | HBV | 28 of 29 | 9 | 4 | 5 | 10 | 10%/exons 5–8 | IHC (CM-1)/PCR-RFLP, DNA sequencing/SOMA | 9 |
| Volkmann et al. 2001 [ | Germany | HBV, HCV | 39 | 8 | 3 | 3 | 25 | 10%/exons 5–9 | IHC (DO-1)/PCR-SSCP, DNA sequencing | 10 |
| Zekri et al. 2006 [ | Egypt | HCV | 25 | 7 | 6 | 3 | 9 | 10%/exons 5–8 | IHC (DO-7)/PCR-SSCP, DNA sequencing | 9 |
| Zhang et al. 2006 [ | China | HBV, AFB1 | 40 | 9 | 5 | 2 | 24 | 5%/exons 5–8 | IHC (DO-7)/PCR-DNA sequencing | 10 |
| Zhou et al. 1997 [ | China | HBV | 32 | 2 | 6 | 0 | 24 | NA/exon 7 | IHC (DO-1/Ab-6)/PCR-RFLP | 9 |
HBV/HCV: hepatitis B/C virus; AFB1: aflatoxin B1; IHC: immunohistochemistry; PCR: polymerase chain reaction; SSCP: single-strand conformation polymorphism; RFLP: restriction fragment length polymorphism; SOMA: short oligonucleotide mass spectrometry analysis; DGGE: denaturing gradient gel electrophoresis; QUADAS, Quality Assessment of Diagnostic accuracy studies.
Fig 2Forest plot of the sensitivity and specificity of IHC-determined p53 overexpression in detecting p53 mutations.
(A) Forest plot showing the sensitivity of IHC-determined p53 overexpression in detecting p53 mutations. (B) Forest plot showing the specificity of IHC-determined p53 overexpression in detecting p53 mutations. Abbreviations: CI, confidence interval.
Fig 3Forest plot of the positive likelihood ratio (PLR) and the negative likelihood ratio (NLR) of IHC-determined p53 overexpression in detecting p53 mutations.
(A) Forest plot showing the positive LR of IHC-determined p53 overexpression in detecting p53 mutations. (B) Forest plot showing the negative LR of IHC-determined p53 overexpression in detecting p53 mutations.
Fig 4The summary receiver operating characteristic (SROC) curve and the likelihood ratio scattergram for IHC-determined p53 overexpression in the identification of p53 mutations in HCC for all studies.
(A) The SROC curve summarizes the overall diagnostic accuracy of IHC-determined p53 overexpression for the identification of p53 mutations. The size of the dots for 1-specificity and sensitivity of the single studies in the ROC space reflects the sample size (number of patients) in the study. (B) The likelihood ratio scattergram shows the diagnostic performance of IHC-determined p53 overexpression in the identification of p53 mutations. Q* = point at which sensitivity and specificity were equal.
The results of subgroup analyses.
| Variables | SEN (95% CI), | SPE (95% CI), | PLR (95% CI), | NLR (95% CI), | DOR (95% CI), | |
|---|---|---|---|---|---|---|
| Before 1999 | 17 | 0.79 (0.72−0.85), 0 | 0.82 (0.78−0.86), 53.1 | 3.66 (2.88−4.64), 0 | 0.37 (0.26−0.53), 28.8 | 13.79 (8.37−22.72), 0 |
| After 2000 | 19 | 0.84 (0.81−0.88), 76.1 | 0.68 (0.65−0.72), 68.0 | 2.23 (1.80−2.76), 46.8 | 0.35 (0.22−0.58), 80.1 | 7.91 (4.18−14.98), 58.6 |
| Asia and Africa | 23 | 0.85 (0.82−0.88), 63.9 | 0.70 (0.66−0.73), 67.6 | 2.57 (2.09−3.15), 54.0 | 0.31 (0.22−0.44), 60.3 | 10.47 (6.32−17.34), 46.8 |
| Europe and America | 13 | 0.66 (0.53−0.77), 40.5 | 0.83 (0.78−0.86), 58.2 | 3.07 (2.02−4.66), 14.8 | 0.54 (0.349−0.82), 48.8 | 8.01 (3.50−18.35), 24.5 |
| ≥ 46 | 10 | 0.85 (0.81−0.88), 83.5 | 0.72 (0.68−0.75), 82.3 | 2.60 (1.94−3.48), 69.8 | 0.31 (0.17−0.57), 85.4 | 10.41 (4.97−21.81), 67.9 |
| < 46 | 26 | 0.79 (0.72−0.85), 31.2 | 0.77 (0.73−0.81), 60.5 | 2.70 (2.12−3.44), 24.1 | 0.41 (0.29−0.58), 43.8 | 9.10 (5.39−15.34), 15.9 |
| DO-7 antibody | 17 | 0.73 (0.66−0.79), 58.1 | 0.71 (0.67−0.75), 69.0 | 2.27 (1.73−2.99), 47.2 | 0.46 (0.32−0.67), 61.2 | 6.48 (3.53−11.88), 39.0 |
| DO-1 antibody | 4 | 0.80 (0.73−0.89), 0 | 0.84 (0.77−0.89), 0 | 4.74 (3.21−7.01), 0 | 0.26 (0.16−0.43), 0 | 19.75 (8.98−43.42), 0 |
| CM-1 antibody | 4 | 0.71 (0.54−0.85), 17.1 | 0.59 (0.46−0.71), 0 | 1.71 (1.21−2.43), 0 | 0.58 (0.34−0.99), 10.0 | 3.69 (1.46−9.34), 0 |
| PAb1801 antibody | 4 | 0.80 (0.52−0.96), 0 | 0.91 (0.82−0.97), 79.4 | 8.54 (1.82−40.14), 60.3 | 0.34 (0.15−0.75), 0 | 30.79 (6.58−144.13), 0 |
| All DNA sequencing | 21 | 0.89 (0.85−0.92), 57.3 | 0.70 (0.66−0.74), 75.2 | 2.43 (1.93−3.06), 39.9 | 0.32 (0.19−0.55), 73.6 | 11.10 (5.96−20.68), 36.8 |
| Partial DNA sequencing | 15 | 0.72 (0.65−0.77), 39.4 | 0.78 (0.74−0.81), 53.4 | 2.80 (2.09−3.77), 51.5 | 0.43 (0.31−0.59), 54.5 | 7.81 (4.32−14.10), 49.3 |
| Mutation ≥ 35% | 15 | 0.85 (0.82−0.88), 71.2 | 0.67 (0.64−0.73), 50.0 | 2.41 (1.92−3.03), 37.0 | 0.30 (0.20−0.47), 66.7 | 9.74 (5.18−18.33), 56.4 |
| Mutation < 35% | 21 | 0.76 (0.68−0.83), 48.0 | 0.77 (0.74−0.80), 75.0 | 2.94 (2.15−4.04), 54.2 | 0.43 (0.28−0.66), 61.3 | 9.91 (5.40−18.18), 25.5 |
| Overexpression ≥ 46% | 18 | 0.87 (0.83−0.90), 63.1 | 0.64 (0.59−0.68), 32.8 | 2.21 (1.84−2.65), 33.0 | 0.29 (0.19−0.45), 60.1 | 8.82 (4.97−15.67), 47.3 |
| Overexpression < 46% | 18 | 0.71 (0.62−0.78), 42.1 | 0.83 (0.79−0.86), 58.3 | 3.71 (2.70−5.11), 27.9 | 0.46 (0.31−0.68), 62.3 | 11.21 (5.63−22.29), 36.8 |
SEN, sensitivity; SPE, specificity; PLR, positive likelihood ratio; NLR, negative likelihood ratio; DOR, diagnostic odds ratio; CI, confidence interval.
Fig 5The Deeks’ funnel plot and asymmetry test of the meta-analysis of the 36 included studies.