Literature DB >> 27414265

Recent Developments in Fully Fluctuating Field-Theoretic Simulations of Polymer Melts and Solutions.

Kris T Delaney1, Glenn H Fredrickson1,2.   

Abstract

We review the latest developments in computational methods for direct simulation of fully fluctuating field theories of polymeric assemblies. In this context, we describe a newly developed theoretical and computational framework for accurately computing fluctuation-corrected phase diagrams of mesostructured polymer systems and report the first such complete phase diagram for a diblock copolymer melt. The method is based on complex Langevin sampling of a UV regularized field-theoretic model, with Helmholtz free energies computed using thermodynamic integration. UV regularization ensures that the free energies do not have an arbitrary reference; they can be compared between incommensurate phases, permitting for the first time the computation of order-order transitions with fluctuation corrections. We further demonstrate that computed free energies are accurate in the disordered phase by comparison to perturbation theory on the one-loop level. Importantly, we note that our method uses no uncontrolled approximations beyond the initial definition of a coarse-grained molecular model for the polymer melt or solution. The method can be applied straightforwardly to melts and solutions containing multiple species with diverse polymer architectures.

Entities:  

Year:  2016        PMID: 27414265     DOI: 10.1021/acs.jpcb.6b05704

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Molecular design of self-coacervation phenomena in block polyampholytes.

Authors:  Scott P O Danielsen; James McCarty; Joan-Emma Shea; Kris T Delaney; Glenn H Fredrickson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-04       Impact factor: 11.205

2.  Stability of the A15 phase in diblock copolymer melts.

Authors:  Morgan W Bates; Joshua Lequieu; Stephanie M Barbon; Ronald M Lewis; Kris T Delaney; Athina Anastasaki; Craig J Hawker; Glenn H Fredrickson; Christopher M Bates
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-17       Impact factor: 11.205

3.  Narrow equilibrium window for complex coacervation of tau and RNA under cellular conditions.

Authors:  Yanxian Lin; James McCarty; Jennifer N Rauch; Kris T Delaney; Kenneth S Kosik; Glenn H Fredrickson; Joan-Emma Shea; Songi Han
Journal:  Elife       Date:  2019-04-05       Impact factor: 8.140

4.  Direct free energy evaluation of classical and quantum many-body systems via field-theoretic simulation.

Authors:  Glenn H Fredrickson; Kris T Delaney
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-26       Impact factor: 12.779

5.  Origins of low-symmetry phases in asymmetric diblock copolymer melts.

Authors:  Kyungtae Kim; Akash Arora; Ronald M Lewis; Meijiao Liu; Weihua Li; An-Chang Shi; Kevin D Dorfman; Frank S Bates
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-18       Impact factor: 11.205

Review 6.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

Review 7.  Physics-based computational and theoretical approaches to intrinsically disordered proteins.

Authors:  Joan-Emma Shea; Robert B Best; Jeetain Mittal
Journal:  Curr Opin Struct Biol       Date:  2021-02-02       Impact factor: 6.809

8.  Liquid-liquid phase separation of Tau by self and complex coacervation.

Authors:  Saeed Najafi; Yanxian Lin; Andrew P Longhini; Xuemei Zhang; Kris T Delaney; Kenneth S Kosik; Glenn H Fredrickson; Joan-Emma Shea; Songi Han
Journal:  Protein Sci       Date:  2021-05-19       Impact factor: 6.993

9.  LASSI: A lattice model for simulating phase transitions of multivalent proteins.

Authors:  Jeong-Mo Choi; Furqan Dar; Rohit V Pappu
Journal:  PLoS Comput Biol       Date:  2019-10-21       Impact factor: 4.475

  9 in total

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