| Literature DB >> 27409605 |
Abstract
This follow-up paper completes the author's investigations to explore the in-solution structural preferences and relative free energies of allEntities:
Keywords: IEF-PCM/B97D/aug-cc-pv(q+(d))z; Monte Carlo; hydrogen bonds; solution structure; tautomeric equilibria
Mesh:
Substances:
Year: 2016 PMID: 27409605 PMCID: PMC4964470 DOI: 10.3390/ijms17071094
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Schematic representation of the structures 1a– 8c in the text.
Relative free energies for the conformers/tautomers of the oxazole and thiazole OH derivatives. Energy terms in kJ/mol relative to the corresponding cis OH species a.
| Gas | CH2Cl2 | Water | |||||
|---|---|---|---|---|---|---|---|
| Δ | Δ | Δ | Δ | Δ | Δ | Δ | |
| 2OH oxazole | |||||||
| 2OH, | 7.8 | 10.0 | −6.6 | 3.4 | 11.2 | −9.1 | 2.1 |
| 2-one, NH | −52.0 | −45.4 | −17.0 | −62.4 | −42.7 | −21.9 | −64.6 |
| 2-one, C5H | −23.6 | −16.8 | −20.6 | −37.4 | −13.4 | −26.8 | −40.2 |
| 2OH thiazole | |||||||
| 2OH, | 12.6 | 17.1 | −11.2 | 5.9 | 18.8 | −11.5 | 7.3 |
| 2-one, NH | −45.9 | −40.7 | −14.2 | −54.9 | −38.2 | −14.7 | −52.9 |
| 2-one, C5H | −9.1 | −1.8 | −17.8 | −19.6 | 1.6 | −19.8 | −18.2 |
| 4OH oxazole | |||||||
| 4OH, | 11.5 | 15.1 | −10.8 | 4.3 | 16.9 | −14.4 | 2.5 |
| 4-one, C5H | −29.5 | −23.6 | −16.3 | −39.9 | −21.0 | −20.8 | −41.8 |
| 4OH thiazole | |||||||
| 4OH, | 11.9 | 16.2 | −11.6 | 4.6 | 18.3 | −15.6 | 2.7 |
| 4-one, C5H | −8.0 | −1.7 | −16.5 | −18.2 | 1.3 | −21.8 | −20.5 |
a The free energy components for the oxazole and thiazole OH derivatives were calculated at the B97D/aug-cc-pvqz//B97D/aug-cc-pvtz and B97D/aug-cc-pv(q+d)z//B97D/aug-cc-pv(t+d)z theoretical levels, respectively. The in-solution data were obtained by utilizing the IEF-PCM continuum dielectric solvent approximation. ΔGint = ΔEint + ΔGthermal, superscripts “g” and “s” refer to the gas-phase and the in-solution relative terms.
Relative free energies for the conformers/tautomers of the isoxazole and isothiazole OH derivatives. Energies in kJ/mol relative to the corresponding cis OH species a.
| Gas | CH2Cl2 | Water | |||||
|---|---|---|---|---|---|---|---|
| Δ | Δ | Δ | Δ | Δ | Δ | Δ | |
| 3OH isoxazole | |||||||
| 3OH, | 13.5 | 17.9 | −12.7 | 5.2 | 20.1 | −17.2 | 2.9 |
| 3-one, NH | 4.6 b | 9.8 | −11.2 | −3.1 b | 11.3 | −14.3 | −4.7 b |
| 3OH isothiazole | |||||||
| 3OH, | 14.9 | 19.3 | −12.9 | 6.4 | 21.6 | −17.5 | 4.1 |
| 3-one, NH | 4.6 | 13.6 | −19.2 | −5.6 | 16.4 | −24.7 | −8.2 |
| 4OH isoxazole | |||||||
| 4OH, | 0.0 | 0.1 | −0.2 | −0.1 | 0.1 | −0.2 | −0.1 |
| 4-one, C5H | 1.9 | −0.6 | 6.6 | 6.0 | −1.6 | 9.2 | 7.6 |
| 4OH isothiazole | |||||||
| 4OH, | −0.4 | 0.8 | −1.1 | −0.3 | 1.0 | −1.6 | −0.6 |
| 4-one, C5H | 12.9 | 12.7 | 3.3 | 15.9 | 12.3 | 4.8 | 17.1 |
a See the footnote of Table 1; b –RT ln 2 = –1.71 kJ/mol is included for the entropy of mixing of the optical antipodes with C1 symmetry.
The prevailing tautomers for the OH derivatives in solution with relative free energy of at least 4.184 kJ/mol a.
| CH2Cl2 | Water | Exp b,c | |
|---|---|---|---|
| oxazole | 2-one, NH | 2-one, NH | 2-one, NH |
| thiazole | 2-one, NH | 2-one, NH | 2-one, NH |
| isoxazole | 3-one, NH/3OH | 3-one, NH | Mainly 3OH in all media |
| isothiazole | 3-one, NH | 3-one, NH | 3OH |
| oxazole | 4-one, C5H | 4-one, C5H | 4-one, C5H |
| thiazole | 4-one, C5H | 4-one, C5H | 4OH and 4-one, C5H no ratio provided |
| isoxazole | 4OH, | 4OH, | 4OH |
| isothiazole | 4OH, | 4OH, | 4OH |
| oxazole | 5-one, C4H | 5-one, C4H | 5-one, C4H (in crystal) |
| thiazole | 5-one, C4H | 5-one, C4H | |
| isoxazole | 5-one, C4H/5-one, NH | 5-one, C4H/5-one, NH | 5-one, C4H in CH3Cl3, NH/CH 55:45 in water e |
| isothiazole | 5-one, NH | 5-one, NH | 5-one, NH f |
| 3CH3,5OH isoxazole | 5-one, C4H | C4H/NH 70:30 in water | |
| 4CH3,5OH isoxazole | 5-one, NH | 5-one, NH |
a If the difference between the most stable and the second-most stable species is less than 4.184 kJ/mol, the code of the second-most stable form appears after the slash; b,c [49,50]. For the original references see “e” and “f” specifically; Theoretical results from d [19], e [51], f [52].
Comparison of the relative solvation-free energies from IEF-PCM and Monte Carlo calculations. Corresponding dipole moments are indicated a.
| CH2Cl2 | Water | |||||
|---|---|---|---|---|---|---|
| PCM | MC | DM | PCM | MC | DM | |
| Oxazole | ||||||
| 1a → 1c | −17.0 | 0.25, 6.21 | −21.9 | −22.4 | 0.35, 6.52 | |
| 1c → 1d | 6.21, 7.35 | 6.52, 7.71 | ||||
| 3b → 3c | −5.5 | 3.35, 5.15 | −6.4 | −7.6 | 3.54, 5.43 | |
| Thiazole | ||||||
| 2a → 2c | −14.2 | 0.58, 5.59 | −14.7 | −23.7 | 0.62, 5.90 | |
| 2c → 2d | 5.59, 7.08 | 5.90, 7.48 | ||||
| 4b → 4c | −4.9 | 3.51, 5.33 | −6.2 | −5.8 | 3.75, 5.70 | |
| Isoxazole | ||||||
| 5a → 5c | −11.2 | −9.9 | 2.31, 4.88 | −14.3 | −17.7 | 2.43, 5.14 |
| 7b → 7c | 6.8 | 4.46, 0.89 | 9.4 | 8.1 | 4.67, 0.92 | |
| Isothiazole | ||||||
| 6a → 6c | −19.2 | 1.73, 5.34 | −24.7 | −40.3 | 1.84, 5.69 | |
| 8b → 8c | 4.27, 2.05 | 6.4 | 5.8 | 4.51, 2.17 | ||
a Energies in kJ/mol, IEF-PCM/B97D/aug-cc-pv(q+(d))z dipole moments along the transformations in Debye. ΔGsolv with opposite sign from PCM and MC in bold face.
Coordination numbers (CN) and numbers of solute−water hydrogen bonds a.
| Oring/Hw | Sring/Hw | N/Hw | NH/Ow | −O/Hw | OH/Ow | =O/Hw | ||
|---|---|---|---|---|---|---|---|---|
| Oxazole | ||||||||
| 1a | --- b | 1.4 | 0.6 | 1.0 | 2.1(−14.6) | |||
| 1c | 0.3 c | 1.1 | 2.3 | 2.8(−16.7) | ||||
| 1d | 0.1 c | 0.6 | 1.9 | 2.1(−16.7 d) | ||||
| 3b | 0.4 | 1.3 | 0.8 e | 1.0 | 2.6(−14.6) | |||
| 3c | 0.1 f | 0.9 | 1.9 | 2.4(−16.7) | ||||
| Thiazole | ||||||||
| 2a | --- b | 1.3 g | 0.7 | 1.0 | 1.7(−14.6) | |||
| 2c | --- b | 1.0 | 2.1 | 2.7(−16.7) | ||||
| 2d | --- b | 1.0 | 1.9 | 2.2(−16.7 d) | ||||
| 4b | --- b | 1.6 | 0.9 | 1.0 | 2.7(−14.6) | |||
| 4c | --- b | 1.0 | 2.1 | 2.8(−14.6) | ||||
| Isoxazole | ||||||||
| 5a | 1.9 h | 2.0 i | 0.7 | 1.0 | 2.5(−14.6) | |||
| 5c | --- b | 1.0 | 2.4 | 3.2(−16.7) | ||||
| 7b | 1.1 | 1.7 | 0.8 | 1.0 | 2.2(−16.7) | |||
| 7c | 0.7 j | 1.1 | 1.5 | 2.2(−12.6 d) | ||||
| Isothiazole | ||||||||
| 6a | (0.2) k | 1.5 g | 0.9 | 1.0 | 2.8(−10.5) | |||
| 6c | --- b | 1.0 | 2.6 | 3.5(−16.7) | ||||
| 8b | --- b | 1.5 | 0.9 | 1.0 | 1.9(−16.7 d) | |||
| 8c | --- b | 0.4 l | 1.7 | 1.3(−16.7) |
a Coordination numbers were determined by the integration of the corresponding radial distribution functions up to their first minima generally at 250 ± 10 pm. Values in parentheses for nHB stand for the integration limits in kJ/mol for the solute−solvent pair-energy distribution functions; b No local minimum of rdf below 250 pm; c End of a rdf plateau at 225 pm; d End of a pedf plateau; e Rdf minimum at 230 pm; f Rdf minimum at 220 pm; g Rdf minimum at 265 pm; h Rdf minimum at 275 pm; i Rdf minimum at 270 pm; j End of a rdf plateau at 245 pm; k 0.2 Hw around the sulfur atom up to S…Hw = 250 pm without having a local rdf minimum up to this limit; l End of a rdf plateau at 240 pm.