Ehsan Ullah Mughal1, Jamshaid Ashraf1, Essam M Hussein2,3, Yasir Nazir4,5, Abdulaziz S Alwuthaynani2, Nafeesa Naeem1, Amina Sadiq6, Reem I Alsantali7, Saleh A Ahmed2,3. 1. Department of Chemistry, University of Gujrat, Gujrat 50700, Pakistan. 2. Department of Chemistry, Faculty of Applied Sciences, Umm Al-Qura University, Makkah 21955, Saudi Arabia. 3. Department of Chemistry, Faculty of Science, Assiut University, Assiut 71516, Egypt. 4. Department of Chemistry, Allama Iqbal Open University, Islamabad 44000 Pakistan. 5. Department of Chemistry, University of Sialkot, Sialkot 51300, Pakistan. 6. Department of Chemistry, Govt. College Women University, Sialkot 51300, Pakistan. 7. Department of Pharmaceutical Chemistry, College of Pharmacy, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia.
Abstract
To find new potential tyrosinase inhibitors, a diverse range of 2-arylchromone-4-thione derivatives (2a-2p) were designed and synthesized by employing a multistep strategy, and the newly synthesized compounds, for the first time, were screened in vitro for their tyrosinase inhibitory activity. In this context, the newly synthesized compounds (2a-2p) were characterized using a combination of several spectroscopic techniques including Fourier transform infrared, UV-vis, 1H NMR, and 13C NMR spectroscopies and electron ionization-mass spectrometry. All the target compounds were potent against tyrosinase as compared to the standard inhibitor kojic acid (half-maximal inhibitory concentration (IC50) = 12.6 ± 0.6 μM). The compounds (2a-2p) produced IC50 values in the range from 1.12 ± 0.04 to 5.68 ± 0.13 μM. Among the synthesized 4-thioflavones and 4-thioflavonols, the compound 2n exhibited excellent tyrosinase inhibitory activity with the lowest IC50 of 1.12 ± 0.04 μM that could be recommended as potential lead candidates to cure tyrosinase-mediated hyperpigmentation in the future. A kinetic study of compound 2n revealed that compound 2n inhibited tyrosinase in a competitive mode. Furthermore, the nontoxic performance of the most beneficial compounds ranging from 1 to 25 g/mL was determined using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide test method for A375 human melanoma cells for the highly efficient target compounds (2m, 2n, 2o, and 2p). Moreover, a molecular modeling study was performed against tyrosinase enzyme (2Y9X) to check the binding interactions of the synthesized compounds (2a-2p) against the target protein. Furthermore, quantitative structure-activity relationship studies were conducted based on an antityrosinase assay. The value of the correlation coefficient (R 2) 0.9997 shows that there was a good correlation between (2a-2p) structures and selected properties. The geometry optimization of all complexes was performed by using Gaussian 09. Additionally, a drug-likeness research was used to establish the potent analogues' positive action as a new antityrosinase agent (2n, 2o, and 2p).
To find new potential tyrosinase inhibitors, a diverse range of 2-arylchromone-4-thione derivatives (2a-2p) were designed and synthesized by employing a multistep strategy, and the newly synthesized compounds, for the first time, were screened in vitro for their tyrosinase inhibitory activity. In this context, the newly synthesized compounds (2a-2p) were characterized using a combination of several spectroscopic techniques including Fourier transform infrared, UV-vis, 1H NMR, and 13C NMR spectroscopies and electron ionization-mass spectrometry. All the target compounds were potent against tyrosinase as compared to the standard inhibitor kojic acid (half-maximal inhibitory concentration (IC50) = 12.6 ± 0.6 μM). The compounds (2a-2p) produced IC50 values in the range from 1.12 ± 0.04 to 5.68 ± 0.13 μM. Among the synthesized 4-thioflavones and 4-thioflavonols, the compound 2n exhibited excellent tyrosinase inhibitory activity with the lowest IC50 of 1.12 ± 0.04 μM that could be recommended as potential lead candidates to cure tyrosinase-mediated hyperpigmentation in the future. A kinetic study of compound 2n revealed that compound 2n inhibited tyrosinase in a competitive mode. Furthermore, the nontoxic performance of the most beneficial compounds ranging from 1 to 25 g/mL was determined using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide test method for A375 human melanoma cells for the highly efficient target compounds (2m, 2n, 2o, and 2p). Moreover, a molecular modeling study was performed against tyrosinase enzyme (2Y9X) to check the binding interactions of the synthesized compounds (2a-2p) against the target protein. Furthermore, quantitative structure-activity relationship studies were conducted based on an antityrosinase assay. The value of the correlation coefficient (R 2) 0.9997 shows that there was a good correlation between (2a-2p) structures and selected properties. The geometry optimization of all complexes was performed by using Gaussian 09. Additionally, a drug-likeness research was used to establish the potent analogues' positive action as a new antityrosinase agent (2n, 2o, and 2p).
Tyrosinase
(EC 1.14.18.1) is a dinuclear copper-containing metalloenzyme
that is found abundantly in nature and plays an influential role in
the biosynthesis pathway of melanin pigment (Raper-Mason pathway).[1] The melanogenesis process is catalyzed by the
tyrosinase enzyme, and it is thus comprised of two steps. Initially, o-diphenol conversion takes place from monophenol by hydroxylation
(monophenolase activity), and subsequently, o-diphenol
gets converted into o-quinone (o-diphenolase activity) by an oxidation process; finally, the formed
quinone product is the key species for the synthesis of the melanin
pigment.[2] Melanin as the main natural biological
pigment has a high determining role in skin and hair pigmentation,[3] which results in a photoprotective function in
humans.[4] However, the accumulation of an
abnormal amount of melanin causes dermatological disorders such as
freckles, melasma, lentigo, etc.[5] and increases
the risk of cancer and other skin diseases.[6] Also, recent studies reported that problems associated with melanogenesis
are linked to the neurodegenerative diseases including Alzheimer’s,
Parkinson’s, and Huntington’s diseases. Although melanogenesis
is a complicated process, it is highly accepted that the tyrosinase
enzyme regulates the biosynthetic pathway for melanin formation.[7] Moreover, tyrosinase is responsible for enzymatic
reactions that brown perished fruits and vegetables. Since tyrosinase
catalyzes rate-limiting steps of melanogenesis, it has been recognized
as a therapeutic target to control melanin synthesis. Therefore, tyrosinase
inhibition provides a promising therapeutic potential in pigmentation
disorders, skin cancers, and neurodegenerative disorders. Furthermore,
tyrosinase inhibitors have become increasingly important in the food
industry as well as in the medicinal and cosmetic products due to
decreasing the excessive accumulation of pigmentation resulting from
the enzyme action.[8−12] Over the past decades, many tyrosinase inhibitors have been reported,
but only a few possess enough potency and safety in the application
of food and pharmaceutical industries.[13] Moreover, the undesirable phenomena related to melanin have persuaded
researchers to search for new potent tyrosinase inhibitors used in
skin whitening and antibrowning of foods.[14]Moreover, hyperpigmentation is one of the world’s most
serious
health issues. Despite multiple studies on anti-hyperpigmentation
drug synthesis, there is still a high need for the design, synthesis,
and discovery of effective anti-hyperpigmentation medications to address
the difficulties associated with existing commercial treatments, such
as toxicity and drug resistance.[15−17] Therefore, controlling
a tyrosinase-dependent mechanism of melanogenesis might be the basis
for a potential antimelanoma therapy, and the inhibition of melanogenesis
is one reasonable method to cure hyperpigmentation. A large number
of tyrosinase inhibitors have been discovered and reported; however,
because of their side effects only a few of these inhibitors have
been commercially applied.[18−21,22a] Therefore, the above-mentioned
problems prompted us to develop new safer, more effective, and cheaper
tyrosinase inhibitors. Some substances have been well-described as
tyrosinase inhibitors such as kojic acid and arbutin; however, these
compounds possess undesirable side effects, including carcinogenicity
and cytotoxicity.[23]In this context,
in order to treat the ailments related to overpigmentation
in human bodies, there is a strong urge to design and develop new,
stable, safe, and efficient tyrosinase inhibitors with high efficacy.
Also, it appears as an important objective in the food and medicinal
chemistry.Moreover, numerous sulfur-containing tyrosinase inhibitors
have
been reported in the literature. It is well-known that oxidation caused
by reactive oxygen species (ROS) is a major cause of cellular aging,
melanogenesis, mutagenesis, and carcinogenesis.[24] Sulfur-containing compounds usually possess good antioxidant
and antimelanogenic activities, which can be speculated by their ability
to scavenge free radicals or by their capacity to affect key redox
enzymes and chelate metal ions.[25] Interestingly,
recent studies have highlighted that sulfur-containing small molecules
played a key role in a wide range of fundamental biological functions,
which intensely attracted many researchers to develop new thio-compounds
in disease therapy and prevention.[26] The
sulfur atom of the compound irreversibly binds/complexes to binuclear
copper ions in the active site of tyrosinase and inhibits the activity.[27] Most of those compounds have an inherent function
in chelating metal ions, which plays a critical role in the inhibition
of tyrosinase.Encouraged by these findings, we decided to extend
the structural
diversity by the replacement of oxygen of the chromone scaffold with
sulfur at position 4. The scientists recently investigated the structural
effects of replacing an oxygen atom with a sulfur atom.[22a−22c,28] This issue may become crucial
in drug design, since the H-bond acceptor (HNA) capacity of the O
and S atoms are different. Furthermore, because the X–C bond
length is significantly longer in the case of X=S than with
X=O, the increased ring size may affect the fit of the ligand
to the receptor.During recent years, compounds containing a
chromone moiety have
become potential targets for many medicinal chemists. The significance
of chromone derivatives lies in their varied biological activities
and a unique position in heterocyclic chemistry.[29−35] Among various chromones, the 4H-chromone core has
acquired a superior position owing to its wide-ranging variety of
bioactivity.[36] The chromone nucleus is
the essential part of many therapeutically important agents. Despite
a wide range of activities, thiochromones have been less attended.[37] In this context, 4-thioflavones and 4-thioflavonols
(2-arylchromones) (Figure ) are interesting targets because of their diverse biological
properties and easy access from the corresponding oxygen analogues;[38] thus, they have been reported to possess potent
biological properties such as anticancer, antimicrobial, green pesticides,
etc.[39−41]
Figure 1
Representative structures of (a) thioflavone and (b) thioflavonol.
Representative structures of (a) thioflavone and (b) thioflavonol.Several research groups are now pursuing various
methods for flavone
and flavonol syntheses and structural modification of the chromone
ring in order to better understand the various roles of thiochromones.[41−49] As a result, a naturally obtained flavone moiety with a wide range
of biological activities can be used as a starting point for the synthesis
of purely synthetic flavone derivatives with various functional groups
at various positions on their skeleton.[50] However, even though the conversion of the carbonyl (C=O)
group in the 2-phenylchromone scaffold into the thiocarbonyl (C=S)
group has been typically described as a viable approach,[31,33,51−54] the inhibitory potential against
the tyrosinase enzyme of sulfur-containing flavones and flavonols
has been not reported yet.The potential pharmacological significance
and the reduced amount
of synthetic work on these compounds have motivated us to synthesize
these new compounds and also assess their role as a mushroom tyrosinase
enzyme inhibitor. Furthermore, because of the noteworthy importance
of flavone and flavonol derivatives in medicinal chemistry and our
continuous effort to develop effective tyrosinase inhibitors, we intended
to discover the tyrosinase inhibition potential of 4-thioflavones
and 4-thioflavonols, which has not been reported. Likewise, it is
also required to study the effect of oxygen replacement with sulfur
and various substituents on the tyrosinase inhibitory potential of
these scaffolds. The biological results have also been validated by
computational studies.
Results and Discussion
Chemistry
The complete synthesis
of target compounds is depicted in Scheme . The first step involves the base-catalyzed
condensation of substituted 2′-hydroxyacetophenone with different
aryl aldehydes in methanol solvent to produce intermediate substituted
2′-hydroxychalcones. From these synthesized chalcone derivatives,
varyingly substituted flavone and flavonol derivatives were synthesized
as follows. In order to prepare flavone derivatives, 2′-hydroxychalcones
were treated with an I2–dimethyl sulfoxide (DMSO)
mixture as the oxidizing system at 140 °C to get the title compounds
(1a–1g) in moderate to good yields.
In the case of flavonols, substituted 2-hydroxychalcones were produced
in situ from aromatic aldehyde and 2′-hydroxyacetophenone and
then transformed into the required flavonols (1h–1p) via a one-pot synthesis using a hydrogen peroxide (H2O2, 35%) solution. Before we proceeded to the next
step, both flavones (1a–1g) and flavonols
(1h–1p) were purified through recrystallization
in ethanol and characterized by UV, Fourier transform infrared (FTIR),
and NMR spectroscopic techniques. Eventually, 2-arylchromes (flavones
and flavonols) were treated individually with Lawesson’s reagent
in the presence of anhydrous toluene. The reaction mixture was refluxed
for 20–24 h under an inert atmosphere to produce the desired
2-arylchromone-4-thiones (4-thioflavones (2a–2g) and 4-thioflavonols (2h–2p)) in good to excellent yields. These target compounds were purified
through recrystallization in ethanol and afterward were characterized
by UV–vis, FTIR, and NMR spectroscopic techniques. The molecular
masses of the final 2-arylchromone-4-thiones were determined by Electron
Ionization (EI) mass spectrometry. Overall, all the obtained spectroscopic
data unequivocally corroborate the structures of newly synthesized
4-thioflavones (2a–2g) and 4-thioflavonols
(2h–2p).
Scheme 1
Synthesis of Flavones
(1a–1g), Flavonols
(1h–1p), Thioflavones (2a–2g), and Thioflavonols (2h–2p)
The spectral data of already
known substituted flavones (1a–1g) and flavonols (1h–1p) have been
reported in the literature.[22a,35] However, the spectral
data of the newly synthesized 4-thioflavones
(2a–2g) and 4-thioflavonols (2h–2p) are given below.
The structures of the
synthesized brominated 4-thioflavones (2a–2g) and 4-thioflavonols (2h–2p) were confirmed by the absorption peaks found at their corresponding
frequencies. Peaks indicating absorption for v(O–H), v(C=O), and v(C=C) in the
ranges of 3391–2990, 1565–1678, and 1450–1550
cm–1, respectively, individually established the
presence of carbonyl linkage in the oxyflavones (1a–1g) and oxyflavonols (1h–1p). However, IR spectra of the corresponding 4-thioflavones (2a–2g) and 4-thioflavonols (2h–2p) appear slightly different. For instance,
there is an additional peak in the region of 1200–1360 cm–1 indicating v(C=S) linkage.
Additionally, in the IR spectrum, the disappearance of the C=O
signal (1610–1665 cm–1) and the appearance
of a C=S new signal around 1200–1300 cm–1 explicitly endorses the replacement of oxygen by a sulfur atom in
the target molecules. The remaining peaks correspond to other functional
groups like OH (3274–3374 cm–1) and C=C
(1400–1510 cm–1). The functionalities present
in the compound were identified, and a satisfactory vibrational band
assignment was made for the fundamental modes of vibration by observing
the position, shape, and intensity of the bands (Figure S1 in the Supporting Information).
NMR Study
For further structural
support, 1H and 13C NMR spectra of the oxyflavonols
and 4-thioflavonols were recorded in DMSO-d6 (Figure S2 in the Supporting Information).
The NMR spectroscopic technique plays an essential role in explaining
the replacement of oxygen by a sulfur atom in target compounds. The 1H and 13C NMR spectra of compound 1k (Figure ) give two
characteristics signals; one peak around δ = 9.47–10.0
ppm belongs to the hydroxyl group (−OH) at position 3, and
the other two doublets in the range of δ = 8.20–8.37
ppm are linked to two protons (Hb & Hc)
present on ring A of the flavonol skeleton. The proton (Ha) of compound 1k is more deshielded due to the presence
of a highly electronegative O″ atom in the vicinity, and thus
it is accountable to give a signal. Remarkably, all NMR peaks in the 1H NMR spectrum of 1k are broader in shape and
shifted toward downfield. This phenomenon is attributed to the intra-
and intermolecular hydrogen bonding and the electron-withdrawing nature
of the carbonyl group present in the simple flavonols because the
electronegative oxygen results in a decrease of the electron density
on the hydroxyl proton as well as other protons present in the molecule.
Figure 2
Stacked 1H NMR spectra of compounds 1k and 2k (magnified aromatic region).
Stacked 1H NMR spectra of compounds 1k and 2k (magnified aromatic region).However, the 1H NMR spectrum of compound 2k (corresponding to 4-thioflavonol) shows a characteristic singlet
in the range of δ = 8.0–9.0 ppm due to a hydroxyl (−OH)
present at position 3 of the 2-arylchromone-4-thione scaffold. Likewise,
the 1H NMR spectrum exhibits two characteristic doublets
around δ = 8.40–8.55 ppm with J = 4.0
Hz by virtue of two protons (Hb & Hc) present
on ring A of the 4-thioflavonol skeleton. Noteworthy, all signals
present in the spectrum of 2k look sharper and are considerably
upfield as compared to the NMR signals of the compound 1k. This is because of less effective hydrogen bonding and less electronegativity
of sulfur atom. For example, the proton (Ha) of compound 2k is relatively less deshielded due to the presence of a
less electronegative S″ atom in the neighborhood, and thus
it is liable to give an upfield and sharp signal as compared to compound 1k.Similarly, in compounds 1k and 2k, there
are other characteristic doublets around δ = 7.47–7.50
ppm and δ = 7.61–7.58 ppm for the aromatic protons labeled
as He and Hf, respectively (Figure ). The Hf protons
are less shielded and slightly downfield in the 1H NMR
spectrum of 4-thioflavonol 2k and more shielded and upfield
in flavonol 1k. Furthermore, the proton NMR spectrum
of compound 2k displays a sharp singlet at δ =
7.26 ppm for the Hd of 4-thioflavonol, whereas it exhibits
a broader and merged singlet at δ = 7.21 ppm for the Hd of the flavonol motif (Figure ).The replacement of oxygen with sulfur in 2-arylchromone-4-thione
derivatives was further confirmed from the 13C NMR spectra,
which were again taken in DMSO-d6 (Figure ). In 13C NMR spectra of compounds 1k and 2k, the
peak of a carbonyl carbon (C=O) and thiocarbonyl carbon (C=S)
appears around δ = 172 and 186 ppm, respectively. In the in
latter, the concerned peak moved downfield, which indicated that the
electron density decreased around the carbon atom on the thiocarbonyl
group because of the larger size of S than O. In compound 1k, the carbonyl carbon peak moved upfield, which indicated that the
electron density increased around the carbon atom of carbonyl group,
probably because of the compact nature and high electron density on
the O atom. Additionally, conjugation between the α,β-unsaturated
double bond and keto group is considerably more effective due to the
(-I)-effect of oxygen in simple 2-arylchromones.
However, their corresponding thio analogues are lacking or have less
effective conjugation due to the low electronegativity of S in comparison
to that of O. So, all these factors make the carbon of the thioketo
group resonate at high chemical shift values. Interestingly, the nature
and position of other carbon peaks in both precursors (2-arylchmromones)
and target compounds (2-arylchromone-4-thiones) are mostly identical.
The peaks at δ = 20.4 and 21.6 ppm represent the aliphatic methyl
groups present on ring B in compounds 1k and 2k.
Figure 3
Stacked 13C NMR spectra of compounds 1k and 2k (whole spectra).
Stacked 13C NMR spectra of compounds 1k and 2k (whole spectra).
Mushroom Tyrosinase Inhibition Assay
In
a continuation of our prior investigations on the subject of mushroom
tyrosinase inhibition,[22,24,55] brominated thioflavones (2a–2g)
and thioflavonols (2h–2p) were examined
for their antityrosinase activity as described in the Experimental section. All the target compounds (2a–2p) showed moderate-to-good inhibition against
mushroom tyrosinase enzyme (Figure and Table ). The half-maximal inhibitory concentration (IC50) values of the investigated compounds and the reference kojic acid
(IC50 = 12.6 ± 0.6 μM) are shown in the table
below. The IC50 values for the compounds (2a–2p) ranged from 1.12 ± 0.04 to 5.68 ±
0.13 μM.
Figure 4
Comparative tyrosinase inhibitory study graph of 4-thioflavones
and 4-thioflavonols.
Table 1
Tyrosinase
Inhibitory Efficiency of
Synthesized Derivatives (2a–2p)
compound No.
mushroom tyrosinase inhibitionaIC50 ± SEM (μM)
2a
5.68 ± 0.13
2b
4.94 ± 0.16
2c
3.90 ± 0.17
2d
3.96 ± 0.14
2e
3.46 ± 0.07
2f
5.06 ± 1.00
2g
4.40 ± 0.13
2h
4.60 ± 0.15
2i
1.55 ± 0.10
2j
3.74 ± 0.28
2k
1.70 ± 0.07
2l
1.37 ± 0.01
2m
1.16 ± 0.07
2n
1.12 ± 0.04
2o
1.45 ± 0.08
2p
1.49 ± 0.8
kojic acidb
12.6 ± 0.6
IC50 values (mean ±
standard error of the mean).
Standard inhibitor for mushroom
tyrosinase.
Comparative tyrosinase inhibitory study graph of 4-thioflavones
and 4-thioflavonols.IC50 values (mean ±
standard error of the mean).Standard inhibitor for mushroom
tyrosinase.Among all the
synthesized 2-arylchromone-4-thiones, the compound
(2n) exhibited excellent tyrosinase inhibitory activity
with the lowest IC50 = 1.12 ± 0.04 μM. Therefore,
compounds 2i (IC50 = 1.55 ± 0.10 μM), 2k (IC50 = 1.70 ± 0.07 μM), 2l (IC50 = 1.37 ± 0.01 μM), 2m (IC50 = 1.16 ± 0.07 μM), 2o (IC50 = 1.45 ± 0.08 μM), and 2p (IC50 = 1.49 ± 0.8 μM) could be recommended as potential lead
candidates to cure tyrosinase-mediated hyperpigmentation in the future.
Kinetic Study
A kinetic study of
the most active compound 2n was evaluated by a Lineweaver–Burk
plot analysis to determine the mode of inhibition mechanism of this
class of compounds. Different concentrations of compound 2n and substrate were employed to determine the enzyme’s reaction
rate in the enzyme kinetic experiments. Plotting 1/V versus 1/[S] yielded a series of lines with varying slopes intersecting
at the Y-axis (Figure a). According to the analysis, the Km values increased with increasing concentrations of 2n, but Vmax remained constant.
These findings suggest that 2n is a competitive inhibitor
of tyrosinase. The enzyme inhibitor dissociation constant (Ki) was calculated by a replot of slopes (Lineweaver–Burk
plot) against various concentrations of 2n. As illustrated
in Figure b, the Ki value of 2n is 1.98 μM.
The kinetic study results showed that 2n is a competitive
tyrosinase inhibitor with a Ki value of
1.98 μM.
Figure 5
(a) Lineweaver–Burk plot for compound 2n. (b)
Secondary replot of slopes (Lineweaver–Burk plot) vs various
concentrations of compound 2n.
(a) Lineweaver–Burk plot for compound 2n. (b)
Secondary replot of slopes (Lineweaver–Burk plot) vs various
concentrations of compound 2n.
Cytotoxicity Study
There are several
skin-lightening chemicals in the market, such as kojic acid, phenylthiourea
(PTU), hydroquinone arbutin, and others, that are widely used as skin-whitening
agents.[51b,51c] However, to meet the criteria, the potent
skin-whitening agent must be trustworthy and free of cytotoxic side
effects. Herein, we synthesized 2a–2p tyrosinase inhibitors in this study,
and they all showed good effectiveness against a mushroom tyrosinase
inhibitor when compared to ordinary kojic acid. However, for the cytotoxicity
test, we chose four extremely powerful inhibitors (2m, 2n, 2o, and 2p). The 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide (MTT) test for A375 human melanoma cells was used to conduct
the cell toxicity investigation. The cells were cultured for 24 h
at different concentrations (1, 5, 10, 15, 20, and 25 μg/mL)
of the most powerful compounds 2m, 2n, 2o, and 2p, with the results of the cell viability
assay shown in Figure . In the cell viability test, all of the compounds have a cell viability
of ∼80% when compared to nontreated cells. Thus, in the concentration
range of 0–25 μg/mL, none of the powerful compounds are
harmful to the A375 human melanoma cells (p <
0.05).
Figure 6
Cell viability measurement using the MTT assay. Cells were untreated
(control) or treated with the most potent compounds 2m, 2n, 2o, and 2p at different
concentrations (1, 5, 10, 15, and 25 μg/mL) in DMSO for 24 h.
Cell viability measurement using the MTT assay. Cells were untreated
(control) or treated with the most potent compounds 2m, 2n, 2o, and 2p at different
concentrations (1, 5, 10, 15, and 25 μg/mL) in DMSO for 24 h.Nonetheless, after a comparison of the compounds
in the series,
the most potent compounds 2m, 2n, 2o, and 2p were shown to have the best results
in cell cytotoxicity tests. As a result, in the realm of medicinal
chemistry, the target compound 2n might be used as an
efficient tyrosinase inhibitor for the development of a novel drug.
Structure–Activity Relationship
All synthetic analogues (2a–2p)
were subjected to their in vitro tyrosinase inhibitory activity. The
inhibitory activity data presented in Table led us to generate an initial structure–activity
relationship (SAR) model in order to investigate the effect of substituent
on the aryl ring as well as the type of substituents on the activity
profile that could be explored (Figure ).
Figure 7
SAR of 4-thioflavone and 4-thioflavonol analogues.
SAR of 4-thioflavone and 4-thioflavonol analogues.Interestingly, the compounds 2n (IC50 =
1.12 ± 0.04 μM) and 2o (IC50 =
1.45 ± 0.08 μM) have a −Br group at the fifth and
seventh positions in ring A and an electron-withdrawing group (−NO2) at the third and fourth positions, respectively, on ring
B of the 3-hydroxythioflavone carbon skeleton, distinctly resulting
in increased inhibitory activity, and thus it was found to be the
most potent tyrosinase inhibitor among all the synthetic brominated
4-thioflavone and 3-hydroxy-4-thioflavone derivatives. Henceforth,
the meta −NO2-substituted compound 2n disclosed increased activity relative to its para-analogue 2o.Furthermore, the third most-potent
compound of this series is compound 2m (IC50 = 1.16 ± 0.07 μM), which has
bromo groups present on Ring A and an electron-withdrawing group (−Cl)
group at the para position on ring B (Figure ). Probably, this group and its position
are appropriate to agreeably interact with the active pocket of the
tyrosinase.Additionally, compounds 2a (IC50 = 5.68
± 0.13 μM), 2b (IC50 = 4.94 ±
0.16 μM), 2c (IC50 = 3.90 ± 0.17
μM), 2e (IC50 = 3.46 ± 0.07 μM), 2g (IC50 = 4.40 ± 0.13 μM), 2h (IC50 = 4.60 ± 0.15 μM), 2i (IC50 = 1.55 ± 0.10 μM), 2k (IC50 = 1.70 ± 0.07 μM), 2l (IC50 =
1.37 ± 0.01 μM), and 2p (IC50 =
1.96 ± 0.8 μM) were found to be even more active than the
standard kojic acid (IC50 = 12.6 ± 0.6 μM).
It is notable that all these derivatives demonstrated exceptional
inhibitory activity against the tyrosinase enzyme.However,
compounds 2d (IC50 = 3.96 ±
0.14 μM), 2f (IC50 = 5.06 ± 1.00
μM), and 2j (IC50 = 3.74 ± 0.28
μM) were found to be less active among the 4-thioflavone and
3-hydroxy-4-thioflavone series against the envisioned enzyme. These
findings reflect that highly hydrophilic, that is, thiophene, −(CH3)2 & sulfonamide-like groups on both aryl rings
(B) are accountable for their low activities because of their diminished
interaction with the tyrosinase. A detailed SAR relation was established
and depicted in Figure .
Molecular Docking Assay
The glide-dock
module was implemented for the docking studies of selected ligands 2n and 2o against the crystal structure of the
target protein mushroom tyrosinase (Protein Data Bank (PDB) identifier
(ID) 2Y9X) (Figure ). The docking scores/energies
were calculated (Table ), and images of docked complexes were also generated (Figure a,b). The predicted binding
interactions by all docking processes suggested the docking scores
(kcal/mol) in the range from −4.2620 to −8.5064 represent
the good-to-best interactions. The ligation mode was mainly focused
on an OH site. The main binding-receptor backbones were histidine,
phenylalanine, alanine, and active-site copper ions. The displayed
images of docking complexes (Figures a,b and 11a,b), especially with
the interacting image, clarify the formerly concluded data.[1,7,14] The surface maps were built over
the receptor atoms, leading to a good view of the electrostatic interactions
inside the docking complexes. Good inhibition of compounds 2n and 2o exhibit high occupancy of the inside surface
grooves pointing to the best blocking of active-site amino acids.
The meta nitro-substituted phenyl ring of best docked
score (−8.5064 kcal/mol) inhibitor 2n is predicted
to form a π–π stacking with active-site residues
His259 and His263, whereas the dibromo-substituted phenyl ring is
predicted if this inhibitor is picking up a π-interaction with
the side-chain residue His244. The para nitrophenyl
moiety of the second-highest docked score (−7.7652 kcal/mol)
compound 2o is interacting with amino acids His85 and
His259 through π–π stacking, and the dibromo-substituted
phenyl ring of this inhibitor is further stabilized by another π-interaction
with active-site residue His244.
Figure 8
Graphical depiction of docking energy
values of thioflavone and
thioflavonol analogues (2a–2p).
Table 2
Binding Energies of the Compounds
(2a–2p) against Various Modes of
Tyrosinase Enzyme
compound No.
docking score PDB ID 2Y9X (kcal/mol)
compound No.
docking score PDB ID 2Y9X (kcal/mol)
2a
–6.0750
2i
–5.8751
2b
–5.8865
2j
–6.2923
2c
–5.8990
2k
–5.7737
2d
–5.7521
2l
–5.9442
2e
–5.4389
2m
–7.3542
2f
–4.9786
2n
–8.5064
2g
–6.3461
2o
–7.7652
2h
–5.5309
2p
–6.0407
kojic acid (standard)
–4.2620 (kcal/mol)
Figure 9
(a) 2D ligand-interaction diagram of compound 2n.
(b) 2D ligand-interaction diagram of compound 2o.
Figure 10
(a) Ball-and-surface diagram of compound 2n. (b) Ball-and-surface
diagram of compound 2o.
Figure 11
(a)
Ball-and-stick diagram of compound 2n. (b) Ball-and-stick
diagram of compound 2o.
Graphical depiction of docking energy
values of thioflavone and
thioflavonol analogues (2a–2p).(a) 2D ligand-interaction diagram of compound 2n.
(b) 2D ligand-interaction diagram of compound 2o.(a) Ball-and-surface diagram of compound 2n. (b) Ball-and-surface
diagram of compound 2o.(a)
Ball-and-stick diagram of compound 2n. (b) Ball-and-stick
diagram of compound 2o.
Quantitative Structure–Activity Relationship
Model
In the present study, the antityrosinase activity of
synthesized ligands was further analyzed for cross-correlation with
chemical descriptors to examine common structure–activity relationship
with chemical descriptors. A correlation was found between the observed
parameters with a correlation coefficient (R2) value of 0.9996. The atomic models of each compound (2a–2p) with its biological activity were
constructed keeping in view the patterns of hydrophilic/phobic interactions
that best express the binding nature of each compound as accessed
from pMIC (logarithmic minimum inhibitory concentration) values.56e The pMICs were separated as training and test sets. Since
there are no previous data for the tyrosinase inhibitory activity
of 2a–2p, pMIC values were used for
both training and test sets. The test set and training set values
clearly show a positive correlation between the pMIC and biological
activity (Figure a,b).
Figure 12
QSAR model. (a) Training set. (b) Test set.
QSAR model. (a) Training set. (b) Test set.The various parameters and pMIC correlation coefficient value obtained
are shown here. SD: standard deviation of regression = 0.0364; F: variance ratio (ratio of the model variance to the observed
activity variance) = 4721.88; P: significance level
of variance ratio = 1.076 × 10–10; RMSE: the
RMS error in the test group predictions = 0.031 47; R2: regression coefficient = 0.9997; Q2: correlation coefficient = 0.9996; Pearson-r:
correlation among the predicted and observed activity for the test
group = 0.9999.
Density Functional Theory
(DFT) Study
HOMO–LUMO Analysis
The
highest occupied molecular orbital (HOMO) (donor) and lowest unoccupied
molecular orbital (LUMO) (acceptor) parameters are very important
in many disciplines of chemistry to specify the formation of charge.
Electrons are directly involved in many chemical reactions, and therefore
the HOMO and LUMO affect the chemical action of the molecule. Here,
the HOMO and LUMO analyses of 5,7-dibromo-3-hydroxy-2-(3-nitrophenyl)-4H-chromene-4-thione (2n) and 5,7-dibromo-3-hydroxy-2-(4-nitrophenyl)-4H-chromene-4-thione (2o) derivatives were accomplished
with the B3LYP function and 3-21G basic set. The quantum calculations
of compounds 2n and 2o were performed in
Gaussian by using the GaussView interface. The resulting HOMO/LUMO,
ionization potential, energy gap, and electron affinity values and
other descriptors were calculated (Table ). The energy gap is used to indicate the
structure stability, and the molecule with a higher energy gap is
more stable than the molecule with a smaller gap.[53] The energy gap for selected compounds presents the order 2o < 2p < 2m < 2n, indicating that the compound 2n is potentially more
stable than the others. Moreover, the HOMO/LUMO distributions of the
selected compounds were calculated (Figure ). In addition, electron affinity, ionization
potential, chemical hardness, electronic chemical potential, and chemical
softness are calculated by using HOMO/LUMO energy values.
Table 3
HOMO and LUMO Energy Values and Other
Related Parameters of 2m, 2n, 2o, and 2p
compounds
parameters
(eV)
2m
2n
2o
2p
ELUMO
–0.114 34
–0.117 32
–0.126 83
–0.107 87
EHOMO
–0.224 92
–0.228 57
–0.230 21
–0.211 53
energy gap |EHOMO – ELUMO|
0.110 58
0.111 25
0.103 38
0.103 66
ionization potential (I = −EHOMO)
0.224 92
0.228 57
0.230 21
0.211 53
electron affinity (A = −ELUMO)
0.114 34
0.117 32
0.126 83
0.107 87
chemical hardness (η = (I – A)/2)
0.055 29
0.055 62
0.051 69
0.051 83
chemical softness (ζ = 1/2η)
9.043 22
8.988 76
9.673 05
9.646 92
electronegativity (χ
= (I + A)/2)
0.169 63
0.172 94
0.178 52
0.1597
chemical potential (μ = −(I + A)/2)
–0.169 63
–0.172 94
–0.178 52
–0.1597
electrophilicity index
(ω = μ2/2η)
3.068 00
3.109 40
3.453 66
3.081 22
Figure 13
HOMO and
LUMO plots of compounds 2m, 2n, 2o, and 2p in B3LYP/3-21 G.
HOMO and
LUMO plots of compounds 2m, 2n, 2o, and 2p in B3LYP/3-21 G.
Molecular Electrostatic Potential
The
molecular electrostatic potential (MEP) could be an important
approach to confirm the evidence for interaction of these molecules
as inhibitors. MEP defines the size, shape, and positive, negative,
and neutral regions in a molecule with the help of color grading.
The increasing order of potential is red < orange < yellow <
green < blue. It is very easy to find favorable sites for an attack
of a nucleophile and electrophile by following the color order. The
blue color suggests the area with maximum electrostatic capability,
which indicates the absence of the electrons in that region and therefore
the favored site for a nucleophilic attack, while the red color indicates
the areas with low electrostatic potential, which suggests the abundance
of electrons and therefore a favored site for an electrophilic attack.[58] According to the MEP analysis, the areas of
least potential are positioned at the oxygen atoms of the nitro group
(red coded region) in each system as shown in Figure . The hydrogen of a benzene ring seems to
show that a positive (blue) potential in each system appears to have
increased potential. The degree to which drug-like molecules bind
to receptors at the active sites of the targeted receptor is primarily
determined by the difference in mapping this electrostatic potential
around them.
Figure 14
Molecular electrostatic potential of compounds 2m, 2n, 2o, and 2p.
Molecular electrostatic potential of compounds 2m, 2n, 2o, and 2p.
Chemo-Informatics and Lipinski’s
Rule
The expected chemo-informatics properties like polarizability,
solubility, and polar surface area (PSA) were computed. On the basis
of a literature review, a standard value for molar molecular weight
(160–480) and number of atoms (20–70) was determined.[34,35] The anticipated values of 2n, 2o, and 2p are substantially better than standard values and all other
produced compounds, according to the findings. The computational results
predicted that 2n, 2o, and 2p possesses 5, 5, and 5 HBA (≤10), 1, 1, and 1 hydrogen-bond
donors (HBD) (≤5) and 4.09, 4.11, and 4.79 LogP (<5), 17.51,
12.78, and 7.14 mg/L LogS and PSA 60.46, 60.46, and 37.46 A2 (≤120A2) values, respectively, which significantly
justified its drug-like behavior with drug-like model scores of −0.58,
−0.44, and −0.02 (Table and Figure ). The findings reveal that a number of analogues have drug-like
effects while not breaking any of the constraints that regulate their
therapeutic potential.
Table 4
Pharmacokinetic Assessment
of Synthesized
Thioflavone and Thioflavonol Analogues (2a–2p)a
compound No.
molecular
formula
molecular weight (g/mol)
No. HBAb
No. HBDc
molecular LogPd
molecular LogSe (mg/L)
molecular PSAf A2
drug-likeness model score
Lipinski’s rule of 5
2a
C17H1279Br2O3S
453.8874
4
0
5.86
0.64
23.80
–0.15
No
2b
C15H779Br2NO3S
438.8513
4
0
5.16
1.43
46.80
–0.67
No
2c
C19H1079Br2OS
443.8819
2
0
7.48
0.03
8.27
–0.46
No
2d
C17H1279Br2OS
421.8976
2
0
6.90
0.41
8.45
–0.55
No
2e
C15H779Br2ClOS
427.8273
2
0
6.92
0.04
8.54
–0.20
No
2f
C13H679Br2OS2
399.8227
3
0
5.78
0.30
9.56
–0.57
No
2g
C24H1579Br2NO3S2
586.8860
4
0
8.15
0.30
37.64
–0.40
No
2h
C16H1079Br2O2S
423.8768
3
1
5.69
0.88
22.20
–0.29
No
2i
C19H1079Br2O2S
459.8768
3
1
6.41
0.06
21.93
–0.31
No
2j
C24H1579Br2NO4S2
602.8809
5
1
7.08
0.52
51.30
–0.27
No
2k
C17H1279Br2O2S
437.8925
3
1
6.06
1.14
22.20
–0.42
No
2l
C17H1379Br2NO2S
452.9034
3
1
5.31
3.38
25.01
–0.36
No
2m
C15H779Br235ClO2S
443.8222
3
1
5.84
0.23
22.20
–0.08
No
2n
C15H779Br2NO4S
454.8463
5
1
4.09
17.51
60.46
–0.58
Yes
2o
C15H779Br2NO4S
454.8463
5
1
4.11
12.78
60.46
–0.44
Yes
2p
C17H1279Br2O4S
469.8823
5
1
4.79
7.14
37.46
–0.02
Yes
The table above depicts all of Lipinski’s
RO5 components.
Number of
hydrogen-bond acceptors.
Number of hydrogen-bond donors.
Octanol–Water partition coefficient.
Measured solubility.
Total polar surface area.
Figure 15
Drug-likeness score bar chart.
The table above depicts all of Lipinski’s
RO5 components.Number of
hydrogen-bond acceptors.Number of hydrogen-bond donors.Octanol–Water partition coefficient.Measured solubility.Total polar surface area.Drug-likeness score bar chart.
Conclusions
In summary, a series of
new 4-thioflavones (2a–2g) and 4-thioflavonols
(2h–2p) were synthesized using precedent
methodologies starting from substituted
2′-hydroxyacetophenone and various substituted aromatic aldehydes
over two steps and characterized by various spectral techniques (UV–vis,
FTIR, NMR, mass spectrometry, etc.). All the synthetic compounds (2a–2p) were evaluated in vitro against
the mushroom tyrosinase enzyme. In order to explore activities of
synthesized thioflavones and thioflavonols in terms of potent tyrosinase
inhibitors, we herein, for the first time, report that the 4-thioflavones
and 3-hydroxy-4-thioflavones are potential new tyrosinase inhibitors.
The in vitro assay revealed that all the synthesized target analogues
(2a–2p) show excellent activity against
mushroom tyrosinase compared with standard kojic acid (IC50 = 12.6 ± 0.6 μM). The compounds (2a–2p) exhibited IC50 values in the range from 1.12
± 0.04 to 5.68 ± 0.13 μM. Among the synthesized 4-thioflavones
and 4-thioflavonols, the compound (2n) exhibited excellent
tyrosinase inhibition with the lowest IC50 value of 1.12
± 0.04 μM. Furthermore, compounds 2i (IC50 = 1.55 ± 0.10 μM), 2k (IC50 = 1.70 ± 0.07 μM), 2l (IC50 =
1.37 ± 0.01 μM), 2m (IC50 = 1.16
± 0.07 μM), 2o (IC50 = 1.45 ±
0.08 μM), and 2p (IC50 = 1.49 ±
0.8 μM) may prove to be effective inhibitors of tyrosinase.
The inhibitory potential of the compounds (2a–2p) was also studied using molecular docking method. Moreover,
kinetic studies revealed that compound 2n has a competitive
inhibition mechanism and that its Ki value
is 1.98 μM. The cell viability of the potential compounds (2m, 2n, 2o, and 2p)
has been calculated at various concentrations ranging from 0 to 25
μg/mL using the MTT assay method for A375 human melanoma. The
computational evaluation concludes that many of the tested molecules,
theoretically, will not have complications with oral bioavailability.
Because of its low toxicity and its high inhibition activity, it could
represent a milestone on the path toward new valuable agents in medical
fields, where it was recently suggested that tyrosinase could play
key role.
Experimental Section
Materials
and Methods
The required
chemicals were purchased from Sigma-Aldrich and Merck and used as
received. Melting points were determined on an Electrothermal melting
point apparatus and are uncorrected. IR spectra were recorded on a
Bio-Rad spectrophotometer. The IR values are expressed in υ units. NMR spectra were measured on a Bruker DRX
400 instrument (1H, 400 MHz; 13C, 101 MHz).
The UV absorption spectra have been recorded on the Jasco UV–vis
V-670 instrument using a QUARTZ cell in very dilute solutions prepared
in different solvents. Accurate mass measurements were performed with
the Fisons VG sector-field instrument (EI) and an FT-ICR mass spectrometer.
General Procedures for the Syntheses of Flavone
(1a–1g), Flavonol (1h–1p), Thioflavone (2a–2g), and Thioflavonol (2h–2p) Derivatives[35,36,38]
A mixture of 3′,5′-dibromo-2′-hydroxyacetophenone
(294 mg, 1.0 mmol) and 5.0 mL of an aqueous sodium hydroxide solution
(30%) was dissolved in 15.0 mL of distilled methanol and stirred for
30 min at room temperature followed by the addition of substituted
aromatic aldehyde (1.0 mmol) dropwise, and the reaction mixture was
further stirred for 3–4 h at the same temperature. The progress
of the intermediate chalcone formation was monitored by comparative
thin-layer chromatography (TLC) using ethyl acetate/n-hexane (1:3) as a mobile phase. After the completion of the reaction
(indicated by TLC), the contents of the reaction mixture were then
acidified by dilute HCl (10%) and poured onto ice-cold water. The
solid obtained was filtered, washed several times with water, and
eventually recrystallized from ethanol to afford the pure product.
In the first route, the substituted chalcone (1.0 mmol) was dissolved
in DMSO (10 mL) and oxidatively cyclized in the presence of I2 (254 mg, 1.0 mmol). The mixture was refluxed at 130 °C
for 3–5 h. Upon reaction completion, as indicated by TLC, the
solution was cooled to room temperature and poured onto crushed ice,
and sodium thiosulfate was added to the reaction mixture followed
by an excessive amount of water to allow precipitation. The product
was filtered and allowed to dry at room temperature, and the solid
was recrystallized from ethanol to furnish the pure flavone derivatives
(1a–1g). In the second route, the
resultant chalcones (in situ) so formed were converted into corresponding
substituted 3-hydroxyflavone derivatives (1h–1p) by conventional Algar-Flynn-Oyamada (AFO) conditions upon
oxidative cyclization using H2O2 (35%) in methanol
and allowing the reaction mixture to stir for a further 1 h at the
same temperature. After the oxidative cyclization of flavone and flavonols,
the synthesized substituted flavone and flavonols (1.0 mmol) were
treated with Lawesson’s reagent (526 mg, 1.3 mmol) in refluxing
anhydrous toluene (15 mL) for 24 h. Subsequently, the excess solvent
was evaporated under vacuum to furnish the dark colored residue, which
was recrystallized by ethanol to obtain the pure 4-thioflavones (2a–2g) and 4-thioflavonols (2h–2p) in excellent yields.
Enzyme
Inhibition Assay
Mushroom Antityrosinase
Assay
To
evaluate the antityrosinase inhibitory activity of target compounds,
an assay was performed as previously reported with slight modifications.[2,6,55] Briefly, the wells of a 96-well
plate were filled with 140 μL of phosphate buffer (20 mM, pH
6.8). Then 20 μL of mushroom tyrosinase (250 U/mL) and 20 μL
of test compound were added, and the mixture was incubated at room
temperature for 10 min. Later, 20 μL (0.85 mM) of 3,4-dihydroxyphenylalanine
(L-DOPA) was added to the mixture. The stock solution of the examined
compounds was prepared using DMSO. The plate was incubated in the
dark for 20 min at 25 °C. Finally, using a plate reader, the
absorbance of dopachrome was measured at 400 nm (Biotek ELX 808).
Each assay was conducted as three separate replicates. The following
formula was used to compute percentage inhibitionwhere X = absorbance of the
enzyme with a test compound, and Y = absorbance of
the enzyme without a test compound. Later, the concentration of the
test compound necessary to achieve 50% tyrosinase inhibition (IC50) was determined by the data analysis and graphing software,
Origin.
Kinetic Analysis
The experimental
approach was identical to that used in the tyrosinase inhibition assay,
and a series of experiments was performed to establish the mode of
inhibition. The concentrations of 2n were 2.0, 1.5, 1.0,
and 0.5 μM. Lineweaver–Burk plots were used to assess
the Km and Vmax of tyrosinase.[29,51a]
Cytotoxicity
Cell Culture and Treatment of 2m, 2n, 2o,
and 2p
Korean Cell Line Bank provided human malignant melanoma
A375 cells (KCLB No. 80003). The cells were grown in Dulbecco’s
Modified Eagle’s Medium (DMEM, Gibco/Invitrogen) with 10% fetal
bovine serum (FBS, Gibco/Invitrogen) at 37 °C, 5% CO2, and 95% air in an incubator.[51b−51d]
Cell Proliferation Assay
Cells
were seeded into 96-well plates at a density of 0.4 × 105 cells per well in 100 μL of medium and cultured for
24 h. Following an overnight incubation, the cell medium was withdrawn,
and the cells were treated for 24 h with concentration gradients of 2m, 2n, 2o, and 2p (1,
5, 10, 15, 20, and 25 μg/mL). Three duplicate wells were included
in each treatment. The cells treated with DMSO served as a negative
control. The medium was removed, 0.5 mg/mL MTT was added to each well,
and the cells were incubated for 6 h at 37 °C in an incubator.
To stop the MTT reaction, the medium was withdrawn, and 100 μL
of solubilization buffer (10% sodium dodecyl sulfate (SDS), 0.01 N
HCl) was added to each well. The plate was covered with foil and agitated
on an orbital shaker for 1 h to dissolve formazan crystals for the
determination of formazan crystal quantity, which was measured using
a microplate reader and the absorbance at 595 nm (Molecular Devices).
The treatment was repeated three times, and the findings were computed
as percentages of growth inhibition based on the mean of two independent
measurements (standard error of the mean (SEM)). The percentage of
viable cells was estimated using the equation below.[51b−51d]
Molecular Modeling Study
The two-dimensional
(2D) structures of the ligands (2a–2p) were sketched using ChemDraw Professional (v15.2), prepared in
their neutral form and configured by adding hydrogens and minimizing
the energy in the applied OPLS3 force field in the Ligprep module
of Maestro Schrodinger. The prepared ligands were further employed
for the docking process. The X-ray crystal structure of the target
protein (PDB ID 2Y9X) was downloaded from the Research Collaboratory for Structural Bioinformatics
(RCSB) protein data bank and configured by the addition of hydrogen
and by the removal of the water molecules beyond 5 Å. The receptor
grid box (20 Å) was generated by selecting the cocrystallized
ligand tropolone in the active site. The default docking setup parameters
were employed for Glide-XP-docking experiment. The inhibitors were
docked against a prepared selected protein with the default settings
until the most stable docking complexes were reached, and the top
15 postures for each ligand are reported. The scoring energies, which
were the mean values of trials using the London dG scoring function,
were upgraded by two unrelated refinements by the triangular Matcher
methods. The interacting complexes as well as electrostatic maps for
the interacting surfaces were extracted, in addition to essential
interaction parameters. The binding mode was predicted based on the
extracted parameters such as ligand, receptor backbones (amino acids),
interaction type, bond lengths, and internal and scoring energies.
The visual inspection and three-dimensional (3D) graphical images
of the best scored docking complex were also generated using Maestro.[22a]
The Maestro Schrodinger Suite (v2017-2) was
used to perform Quantitative Structure Activity Relationship (QSAR)
calculations. The 3D structure of compounds (2a–2p) was drawn and prepared by Ligprep as discussed in the
molecular modeling study. Then, the prepared structures were used
for QSAR investigations. All the docked molecules were used as a training
set, whereas the QSAR model correlates the activities with inherent
properties of each molecule in a test set. Various molecular descriptors
were employed to determine these properties. In the first step of
QSAR studies, descriptors were generated that encode structural information.
In the second step, a statistical regression analysis was used to
correlate the structural variation encoded by the descriptors with
the variation in the biological activity of protein. A multiple linear
regression analysis was performed to test the reliability of results
using inhibitory activity as dependent and descriptor as predictor
variables. The compounds incorporated in the collection of data sets
have inhibitory potencies with IC50 values varying from
1.12 to 5.68 μM and converted to pMICs according to the following
equation.[51e−51h]The QSAR models with p < 0.05 were derived
with reasonable correlation of inhibition
activity and the individual descriptor to ensure the statistical reliability.[51i]
Computational (DFT) Calculations
Density functional theory (DFT) is based on the molecule’s
energy and is calculated by using electron density rather than the
wave function. The electron correlations make the findings more consistent
with the experimental results. In this work, the 3D geometries of
the chromone derivatives (2m, 2n, 2o, and 2p) are drawn by the GaussView (5.0.16)
interface and calculated in the Gaussian (v.09) program. DFT calculations
were performed using basic set 3-21G, B3LYP.[56−60] A Frontier Molecular Orbitals analysis of selected
compounds was obtained after an optimization in DMSO solution. MEP
surfaces were drawn to calculate the charge distributions in a molecule
to understand the interaction of molecules.
Drug-Likeness
Study
The Molinspiration
tool was used to evaluate the drug-like properties of the aforementioned
compounds. Lipinski’s rule of five (RO5) provides the basis
for estimating the bioavailability and pharmacokinetics of a molecule
when administered orally. Computer-aided drug design (CADD) is a fantastic
tool for researchers searching for new chemical entities for biomedical
applications to save time and effort.[29,30]
Authors: Inês L Martins; Catarina Charneira; Valentina Gandin; João L Ferreira da Silva; Gonçalo C Justino; João P Telo; Abel J S C Vieira; Cristina Marzano; Alexandra M M Antunes Journal: J Med Chem Date: 2015-05-07 Impact factor: 7.446