Literature DB >> 16853941

Theoretical studies of the tautomeric equilibria for five-member N-heterocycles in the gas phase and in solution.

Peter I Nagy1, Frederick R Tejada, William S Messer.   

Abstract

Tautomeric equilibria have been studied for five-member N-heterocycles and their methyl derivatives in the gas phase and in different solvents with dielectric constants of epsilon = 4.7-78.4. The free energy changes differently for tautomers upon solvation as compared to the gas phase, resulting in a shift of the equilibrium constant in solution. Solvents with increasing dielectric constant produce more negative solute-solvent interaction energies and increasing internal energies. The methyl-substituted imidazole and pyrrazole form delicate equilibria between two tautomeric forms. Depending on the solvent, the methyl-substituted triazoles and tetrazole have one or two major tautomers in solution. When estimating the relative solvation free energies by means of an explicit solvent model and using the FEP/MC method, one observes that the preferred tautomers differ in several cases from those predicted by the continuum solvent model. The 1,2-prototropic shift, as an intramolecular tautomerization path, requires about 50 kcal/mol activation energy for imidazole in the gas phase, and this route is also disfavored in a solution. The calculated activation free energy along the intramolecular path is 48-50 kcal/mol in chloroform and water as compared to a literature value of 13.6 kcal/mol for pyrrazole in DMSO. A molecular dynamics computer experiment favors the formation of an imidazole chain in chloroform, making the 1,3-tautomerization feasible along an intermolecular path in nonprotic solvents. In aqueous solution, one strong N-H...Ow hydrogen bond is formed for each species, whereas all other nitrogens in the ring form weaker, N...HwOw type hydrogen bonds. The tetrahydrofuran solvent acts as a hydrogen bond acceptor and forms N-H... Oether bonds. Molecules of the dichloromethane solvent are in favorable dipole-dipole interactions with the solute. The results obtained are useful in the design of N-heterocyclic ligands forming specified hydrogen bonds with protein side chains.

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Year:  2005        PMID: 16853941     DOI: 10.1021/jp053076w

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  A theoretical investigation on the proton transfer tautomerization mechanisms of 2-thioxanthine within microsolvent and long range solvent.

Authors:  Hong-Jiang Ren; Ke-He Su; Yan Liu; Xiao-Jun Li; Jun Xiao; Yan-Li Wang
Journal:  J Mol Model       Date:  2013-05-08       Impact factor: 1.810

2.  Theoretical and experimental studies of the isomeric protonation in solution for a prototype aliphatic ring containing two nitrogens.

Authors:  Peter I Nagy; Aditya Maheshwari; Yong-Wah Kim; William S Messer
Journal:  J Phys Chem B       Date:  2010-01-14       Impact factor: 2.991

3.  Theoretical studies of the in-solution isomeric protonation of non-aromatic six-member rings with two nitrogens.

Authors:  Peter I Nagy; William S Messer
Journal:  J Phys Chem B       Date:  2011-03-31       Impact factor: 2.991

4.  Arylazanylpyrazolone derivatives as inhibitors of mutant superoxide dismutase 1 dependent protein aggregation for the treatment of amyotrophic lateral sclerosis.

Authors:  Yinan Zhang; Radhia Benmohamed; He Huang; Tian Chen; Cindy Voisine; Richard I Morimoto; Donald R Kirsch; Richard B Silverman
Journal:  J Med Chem       Date:  2013-03-15       Impact factor: 7.446

5.  REGIOSELECTIVE SYNTHESIS OF EITHER 1H- OR 2H-1,2,3- TRIAZOLES VIA MICHAEL ADDITION TO α,ß-UNSATURATED KETONES.

Authors:  Sen Wai Kwok; Jason E Hein; Valery V Fokin; K Barry Sharpless
Journal:  Heterocycles       Date:  2008-11-01       Impact factor: 0.831

6.  Replacement of Oxygen by Sulfur in Small Organic Molecules. 3. Theoretical Studies on the Tautomeric Equilibria of the 2OH and 4OH-Substituted Oxazole and Thiazole and the 3OH and 4OH-Substituted Isoxazole and Isothiazole in the Isolated State and in Solution.

Authors:  Peter I Nagy
Journal:  Int J Mol Sci       Date:  2016-07-09       Impact factor: 5.923

Review 7.  Revisiting the Structure and Chemistry of 3(5)-Substituted Pyrazoles.

Authors:  Alina Secrieru; Paul Michael O'Neill; Maria Lurdes Santos Cristiano
Journal:  Molecules       Date:  2019-12-20       Impact factor: 4.411

  7 in total

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