Literature DB >> 27404876

CrispRVariants charts the mutation spectrum of genome engineering experiments.

Helen Lindsay1,2, Alexa Burger1, Berthin Biyong1,2, Anastasia Felker1, Christopher Hess1, Jonas Zaugg1, Elena Chiavacci1, Carolin Anders3, Martin Jinek3, Christian Mosimann1, Mark D Robinson1,2.   

Abstract

Mesh：

Year:  2016        PMID： 27404876     DOI： 10.1038/nbt.3628

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  19 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

3.  Genome editing assessment using CRISPR Genome Analyzer (CRISPR-GA).

Authors:  Marc Güell; Luhan Yang; George M Church
Journal:  Bioinformatics       Date:  2014-07-01       Impact factor: 6.937

Review 4.  Toward better understanding of artifacts in variant calling from high-coverage samples.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2014-06-27       Impact factor: 6.937

5.  Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes.

Authors:  Alexa Burger; Helen Lindsay; Anastasia Felker; Christopher Hess; Carolin Anders; Elena Chiavacci; Jonas Zaugg; Lukas M Weber; Raul Catena; Martin Jinek; Mark D Robinson; Christian Mosimann
Journal:  Development       Date:  2016-04-29       Impact factor: 6.868

6.  Rapid reverse genetic screening using CRISPR in zebrafish.

Authors:  Arish N Shah; Crystal F Davey; Alex C Whitebirch; Adam C Miller; Cecilia B Moens
Journal:  Nat Methods       Date:  2015-04-13       Impact factor: 28.547

7.  High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.

Authors:  Gaurav K Varshney; Wuhong Pei; Matthew C LaFave; Jennifer Idol; Lisha Xu; Viviana Gallardo; Blake Carrington; Kevin Bishop; MaryPat Jones; Mingyu Li; Ursula Harper; Sunny C Huang; Anupam Prakash; Wenbiao Chen; Raman Sood; Johan Ledin; Shawn M Burgess
Journal:  Genome Res       Date:  2015-06-05       Impact factor: 9.043

8.  Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.

Authors:  Seung Woo Cho; Sojung Kim; Yongsub Kim; Jiyeon Kweon; Heon Seok Kim; Sangsu Bae; Jin-Soo Kim
Journal:  Genome Res       Date:  2013-11-19       Impact factor: 9.043

9.  Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

Authors:  Jason O'Rawe; Tao Jiang; Guangqing Sun; Yiyang Wu; Wei Wang; Jingchu Hu; Paul Bodily; Lifeng Tian; Hakon Hakonarson; W Evan Johnson; Zhi Wei; Kai Wang; Gholson J Lyon
Journal:  Genome Med       Date:  2013-03-27       Impact factor: 11.117

10.  Allele-specific genome editing and correction of disease-associated phenotypes in rats using the CRISPR-Cas platform.

Authors:  K Yoshimi; T Kaneko; B Voigt; T Mashimo
Journal:  Nat Commun       Date:  2014-06-26       Impact factor: 14.919
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  55 in total

1.  CRISPResso2 provides accurate and rapid genome editing sequence analysis.

Authors:  Kendell Clement; Holly Rees; Matthew C Canver; Jason M Gehrke; Rick Farouni; Jonathan Y Hsu; Mitchel A Cole; David R Liu; J Keith Joung; Daniel E Bauer; Luca Pinello
Journal:  Nat Biotechnol       Date:  2019-03       Impact factor: 54.908

2.  Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.

Authors:  Matthew C Canver; Maximilian Haeussler; Daniel E Bauer; Stuart H Orkin; Neville E Sanjana; Ophir Shalem; Guo-Cheng Yuan; Feng Zhang; Jean-Paul Concordet; Luca Pinello
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

Review 3.  Control of gene editing by manipulation of DNA repair mechanisms.

Authors:  Eric Danner; Sanum Bashir; Saniye Yumlu; Wolfgang Wurst; Benedikt Wefers; Ralf Kühn
Journal:  Mamm Genome       Date:  2017-04-03       Impact factor: 2.957

4.  Mosaicism diminishes the value of pre-implantation embryo biopsies for detecting CRISPR/Cas9 induced mutations in sheep.

Authors:  Marcela Vilarino; Fabian Patrik Suchy; Sheikh Tamir Rashid; Helen Lindsay; Juan Reyes; Bret Roberts McNabb; Talitha van der Meulen; Mark O Huising; Hiromitsu Nakauchi; Pablo Juan Ross
Journal:  Transgenic Res       Date:  2018-10-03       Impact factor: 2.788

5.  Intracellular Ca2+ Homeostasis and Nuclear Export Mediate Exit from Naive Pluripotency.

Authors:  Matthew S MacDougall; Ryan Clarke; Bradley J Merrill
Journal:  Cell Stem Cell       Date:  2019-05-16       Impact factor: 24.633

Review 6.  Technologies and Computational Analysis Strategies for CRISPR Applications.

Authors:  Kendell Clement; Jonathan Y Hsu; Matthew C Canver; J Keith Joung; Luca Pinello
Journal:  Mol Cell       Date:  2020-07-02       Impact factor: 17.970

7.  Synthetic Lethality of Wnt Pathway Activation and Asparaginase in Drug-Resistant Acute Leukemias.

Authors:  Laura Hinze; Maren Pfirrmann; Salmaan Karim; James Degar; Connor McGuckin; Divya Vinjamur; Joshua Sacher; Kristen E Stevenson; Donna S Neuberg; Esteban Orellana; Martin Stanulla; Richard I Gregory; Daniel E Bauer; Florence F Wagner; Kimberly Stegmaier; Alejandro Gutierrez
Journal:  Cancer Cell       Date:  2019-04-15       Impact factor: 31.743

Review 8.  High-throughput methods for genome editing: the more the better.

Authors:  Yong Huang; Meiqi Shang; Tingting Liu; Kejian Wang
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

9.  A defect in the mitochondrial protein Mpv17 underlies the transparent casper zebrafish.

Authors:  Gianluca D'Agati; Rosanna Beltre; Anna Sessa; Alexa Burger; Yi Zhou; Christian Mosimann; Richard M White
Journal:  Dev Biol       Date:  2017-07-28       Impact factor: 3.582

10.  Somatic gene editing ameliorates skeletal and cardiac muscle failure in pig and human models of Duchenne muscular dystrophy.

Authors:  A Moretti; L Fonteyne; F Giesert; P Hoppmann; A B Meier; T Bozoglu; A Baehr; C M Schneider; D Sinnecker; K Klett; T Fröhlich; F Abdel Rahman; T Haufe; S Sun; V Jurisch; B Kessler; R Hinkel; R Dirschinger; E Martens; C Jilek; A Graf; S Krebs; G Santamaria; M Kurome; V Zakhartchenko; B Campbell; K Voelse; A Wolf; T Ziegler; S Reichert; S Lee; F Flenkenthaler; T Dorn; I Jeremias; H Blum; A Dendorfer; A Schnieke; S Krause; M C Walter; N Klymiuk; K L Laugwitz; E Wolf; W Wurst; C Kupatt
Journal:  Nat Med       Date:  2020-01-27       Impact factor: 53.440
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