Literature DB >> 30809026

CRISPResso2 provides accurate and rapid genome editing sequence analysis.

Kendell Clement1,2,3, Holly Rees4,5,6, Matthew C Canver1,2,3, Jason M Gehrke2,3, Rick Farouni1,2,3, Jonathan Y Hsu1,2,3, Mitchel A Cole7, David R Liu4,5,6, J Keith Joung2,3, Daniel E Bauer8,9,10,11, Luca Pinello12,13,14.   

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Year:  2019        PMID： 30809026      PMCID： PMC6533916          DOI： 10.1038/s41587-019-0032-3

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  8 in total

1.  Analyzing CRISPR genome-editing experiments with CRISPResso.

Authors:  Luca Pinello; Matthew C Canver; Megan D Hoban; Stuart H Orkin; Donald B Kohn; Daniel E Bauer; Guo-Cheng Yuan
Journal:  Nat Biotechnol       Date:  2016-07-12       Impact factor: 54.908

2.  CrispRVariants charts the mutation spectrum of genome engineering experiments.

Authors:  Helen Lindsay; Alexa Burger; Berthin Biyong; Anastasia Felker; Christopher Hess; Jonas Zaugg; Elena Chiavacci; Carolin Anders; Martin Jinek; Christian Mosimann; Mark D Robinson
Journal:  Nat Biotechnol       Date:  2016-07-12       Impact factor: 54.908

3.  Allele-Specific CRISPR-Cas9 Genome Editing of the Single-Base P23H Mutation for Rhodopsin-Associated Dominant Retinitis Pigmentosa.

Authors:  Pingjuan Li; Benjamin P Kleinstiver; Mihoko Y Leon; Michelle S Prew; Daniel Navarro-Gomez; Scott H Greenwald; Eric A Pierce; J Keith Joung; Qin Liu
Journal:  CRISPR J       Date:  2018-02

Review 4.  Defining and improving the genome-wide specificities of CRISPR-Cas9 nucleases.

Authors:  Shengdar Q Tsai; J Keith Joung
Journal:  Nat Rev Genet       Date:  2016-05       Impact factor: 53.242

5.  CRISPR-DAV: CRISPR NGS data analysis and visualization pipeline.

Authors:  Xuning Wang; Charles Tilford; Isaac Neuhaus; Gabe Mintier; Qi Guo; John N Feder; Stefan Kirov
Journal:  Bioinformatics       Date:  2017-12-01       Impact factor: 6.937

6.  Cas-analyzer: an online tool for assessing genome editing results using NGS data.

Authors:  Jeongbin Park; Kayeong Lim; Jin-Soo Kim; Sangsu Bae
Journal:  Bioinformatics       Date:  2016-08-24       Impact factor: 6.937

7.  Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage.

Authors:  Alexis C Komor; Yongjoo B Kim; Michael S Packer; John A Zuris; David R Liu
Journal:  Nature       Date:  2016-04-20       Impact factor: 49.962

8.  Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions.

Authors:  Y Bill Kim; Alexis C Komor; Jonathan M Levy; Michael S Packer; Kevin T Zhao; David R Liu
Journal:  Nat Biotechnol       Date:  2017-02-13       Impact factor: 54.908
  8 in total
  234 in total

1.  Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes.

Authors:  Beatriz A Osuna; Shweta Karambelkar; Caroline Mahendra; Kathleen A Christie; Bianca Garcia; Alan R Davidson; Benjamin P Kleinstiver; Samuel Kilcher; Joseph Bondy-Denomy
Journal:  Cell Host Microbe       Date:  2020-04-22       Impact factor: 21.023

Review 2.  BAR-Seq clonal tracking of gene-edited cells.

Authors:  Samuele Ferrari; Stefano Beretta; Aurelien Jacob; Davide Cittaro; Luisa Albano; Ivan Merelli; Luigi Naldini; Pietro Genovese
Journal:  Nat Protoc       Date:  2021-05-24       Impact factor: 13.491

Review 3.  Design and analysis of CRISPR-Cas experiments.

Authors:  Ruth E Hanna; John G Doench
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

4.  High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize.

Authors:  Hai-Jun Liu; Liumei Jian; Jieting Xu; Qinghua Zhang; Maolin Zhang; Minliang Jin; Yong Peng; Jiali Yan; Baozhu Han; Jie Liu; Fan Gao; Xiangguo Liu; Lei Huang; Wenjie Wei; Yunxiu Ding; Xiaofeng Yang; Zhenxian Li; Mingliang Zhang; Jiamin Sun; Minji Bai; Wenhao Song; Hanmo Chen; Xi'ang Sun; Wenqiang Li; Yuming Lu; Ya Liu; Jiuran Zhao; Yangwen Qian; David Jackson; Alisdair R Fernie; Jianbing Yan
Journal:  Plant Cell       Date:  2020-02-25       Impact factor: 11.277

5.  Francisella novicida Cas9 interrogates genomic DNA with very high specificity and can be used for mammalian genome editing.

Authors:  Sundaram Acharya; Arpit Mishra; Deepanjan Paul; Asgar Hussain Ansari; Mohd Azhar; Manoj Kumar; Riya Rauthan; Namrata Sharma; Meghali Aich; Dipanjali Sinha; Saumya Sharma; Shivani Jain; Arjun Ray; Suman Jain; Sivaprakash Ramalingam; Souvik Maiti; Debojyoti Chakraborty
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

6.  Precise genome engineering in Drosophila using prime editing.

Authors:  Justin A Bosch; Gabriel Birchak; Norbert Perrimon
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

7.  BH3 mimetics selectively eliminate chemotherapy-induced senescent cells and improve response in TP53 wild-type breast cancer.

Authors:  Ashkan Shahbandi; Sonia G Rao; Ashlyn Y Anderson; Wesley D Frey; Joy O Olayiwola; Nathan A Ungerleider; James G Jackson
Journal:  Cell Death Differ       Date:  2020-05-26       Impact factor: 15.828

8.  Gene Knock-Ins in Drosophila Using Homology-Independent Insertion of Universal Donor Plasmids.

Authors:  Justin A Bosch; Ryan Colbeth; Jonathan Zirin; Norbert Perrimon
Journal:  Genetics       Date:  2019-11-04       Impact factor: 4.562

9.  Salmonella enterica Infection of Murine and Human Enteroid-Derived Monolayers Elicits Differential Activation of Epithelium-Intrinsic Inflammasomes.

Authors:  Mayumi K Holly; Xiao Han; Leigh A Knodler; Bruce A Vallance; Jason G Smith; Edward J Zhao; Shauna M Crowley; Joannie M Allaire
Journal:  Infect Immun       Date:  2020-06-22       Impact factor: 3.441

10.  POLQ suppresses interhomolog recombination and loss of heterozygosity at targeted DNA breaks.

Authors:  Luther Davis; Kevin J Khoo; Yinbo Zhang; Nancy Maizels
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-01       Impact factor: 11.205
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