Literature DB >> 2740332

Structural characterization of the rat malic enzyme gene.

H Morioka1, M A Magnuson, T Mitsuhashi, M K Song, J E Rall, V M Nikodem.   

Abstract

We have identified and characterized lambda bacteriophage clones containing genomic DNA encoding rat malic enzyme [(S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating); EC 1.1.1.40]. The malic enzyme gene is unexpectedly large, spanning at least 95 kilobases. It is divided into 14 exons that range in size from 76 to 1513 base pairs. The sizes and boundaries of the exons were determined by Southern blotting and DNA sequencing. The sequences at the 5' and 3' ends of each intron conformed to the consensus sequence for mammalian introns. S1 nuclease and primer-extension assays showed that transcription of the malic enzyme gene initiates at multiple sites, the strongest one at position -31 relative to the ATG. "TATA and CCAAT box" homologies are not present in the proximal promoter region. Analysis of the 3' end of the gene showed that the utilization of alternate polyadenylylation signals in exon 14 results in two mRNAs with 3' untranslated regions of 345 and 1345 nucleotides, respectively.

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Year:  1989        PMID: 2740332      PMCID: PMC297525          DOI: 10.1073/pnas.86.13.4912

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Gene within a gene: nested Drosophila genes encode unrelated proteins on opposite DNA strands.

Authors:  S Henikoff; M A Keene; K Fechtel; J W Fristrom
Journal:  Cell       Date:  1986-01-17       Impact factor: 41.582

2.  Structural and functional analysis of the rat malic enzyme gene promoter.

Authors:  H Morioka; G E Tennyson; V M Nikodem
Journal:  Mol Cell Biol       Date:  1988-08       Impact factor: 4.272

3.  Improved estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal:  Nat New Biol       Date:  1973-11-14

4.  Characterization of the human factor VIII gene.

Authors:  J Gitschier; W I Wood; T M Goralka; K L Wion; E Y Chen; D H Eaton; G A Vehar; D J Capon; R M Lawn
Journal:  Nature       Date:  1984 Nov 22-28       Impact factor: 49.962

5.  Quantitation of rat liver messenger ribonucleic acid for malic enzyme during induction by thyroid hormone.

Authors:  H C Towle; C N Mariash; H L Schwartz; J H Oppenheimer
Journal:  Biochemistry       Date:  1981-06-09       Impact factor: 3.162

6.  Tissue-specific regulation of two functional malic enzyme mRNAs by triiodothyronine.

Authors:  B Dozin; M A Magnuson; V M Nikodem
Journal:  Biochemistry       Date:  1985-09-24       Impact factor: 3.162

7.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

8.  Rat hepatic cytosolic phosphoenolpyruvate carboxykinase (GTP). Structures of the protein, messenger RNA, and gene.

Authors:  E G Beale; N B Chrapkiewicz; H A Scoble; R J Metz; D P Quick; R L Noble; J E Donelson; K Biemann; D K Granner
Journal:  J Biol Chem       Date:  1985-09-05       Impact factor: 5.157

9.  Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.

Authors:  J M Chirgwin; A E Przybyla; R J MacDonald; W J Rutter
Journal:  Biochemistry       Date:  1979-11-27       Impact factor: 3.162

10.  Isolation of the human insulin-like growth factor I gene using a single synthetic DNA probe.

Authors:  A Ullrich; C H Berman; T J Dull; A Gray; J M Lee
Journal:  EMBO J       Date:  1984-02       Impact factor: 11.598

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  5 in total

1.  Cloning and sequence of the human adrenodoxin reductase gene.

Authors:  D Lin; Y F Shi; W L Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

2.  Swine cytosolic malic enzyme: cDNA cloning, sequencing, and localization.

Authors:  M Nunes; Y Lahbib-Mansais; C Geffrotin; M Yerle; M Vaiman; C Renard
Journal:  Mamm Genome       Date:  1996-11       Impact factor: 2.957

3.  Duck liver 'malic' enzyme. Expression in Escherichia coli and characterization of the wild-type enzyme and site-directed mutants.

Authors:  R Y Hsu; M J Glynias; J Satterlee; R Feeney; A R Clarke; D C Emery; B A Roe; R K Wilson; A G Goodridge; J J Holbrook
Journal:  Biochem J       Date:  1992-06-15       Impact factor: 3.857

4.  Pre-translational control of hepatic malic enzyme expression during the development of the rat.

Authors:  D J Mann; E Bailey
Journal:  Biochem J       Date:  1991-10-15       Impact factor: 3.857

5.  Identification of direct-repeat-binding protein 1 (DRP-1), a DNA-binding protein that binds specifically to the 'malic' enzyme gene promoter direct repeat element.

Authors:  K G Ford; D P Hornby; W S al Harrasy
Journal:  Biochem J       Date:  1995-11-01       Impact factor: 3.857

  5 in total

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