Literature DB >> 27385073

Minimal Basis Iterative Stockholder: Atoms in Molecules for Force-Field Development.

Toon Verstraelen1, Steven Vandenbrande1, Farnaz Heidar-Zadeh2, Louis Vanduyfhuys1, Veronique Van Speybroeck1, Michel Waroquier1, Paul W Ayers2.   

Abstract

Atomic partial charges appear in the Coulomb term of many force-field models and can be derived from electronic structure calculations with a myriad of atoms-in-molecules (AIM) methods. More advanced models have also been proposed, using the distributed nature of the electron cloud and atomic multipoles. In this work, an electrostatic force field is defined through a concise approximation of the electron density, for which the Coulomb interaction is trivially evaluated. This approximate "pro-density" is expanded in a minimal basis of atom-centered s-type Slater density functions, whose parameters are optimized by minimizing the Kullback-Leibler divergence of the pro-density from a reference electron density, e.g., obtained from an electronic structure calculation. The proposed method, Minimal Basis Iterative Stockholder (MBIS), is a variant of the Hirshfeld AIM method, but it can also be used as a density-fitting technique. An iterative algorithm to refine the pro-density is easily implemented with a linear-scaling computational cost, enabling applications to supramolecular systems. The benefits of the MBIS method are demonstrated with systematic applications to molecular databases and extended models of condensed phases. A comparison to 14 other AIM methods shows its effectiveness when modeling electrostatic interactions. MBIS is also suitable for rescaling atomic polarizabilities in the Tkatchenko-Scheffler scheme for dispersion interactions.

Year:  2016        PMID: 27385073     DOI: 10.1021/acs.jctc.6b00456

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  21 in total

1.  On the accuracy of population analyses based on fitted densities.

Authors:  Aurélien de la Lande; Carine Clavaguéra; Andreas Köster
Journal:  J Mol Model       Date:  2017-03-02       Impact factor: 1.810

2.  Core-valence stockholder AIM analysis and its connection to nonadiabatic effects in small molecules.

Authors:  Paulo H R Amaral; José R Mohallem
Journal:  J Chem Phys       Date:  2017-05-21       Impact factor: 3.488

3.  Fractional nuclear charge approach to isolated anion densities for Hirshfeld partitioning methods.

Authors:  Farnaz Heidar-Zadeh; Paul W Ayers; Patrick Bultinck
Journal:  J Mol Model       Date:  2017-11-21       Impact factor: 1.810

4.  Assessing the accuracy of octanol-water partition coefficient predictions in the SAMPL6 Part II log P Challenge.

Authors:  Mehtap Işık; Teresa Danielle Bergazin; Thomas Fox; Andrea Rizzi; John D Chodera; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2020-02-27       Impact factor: 3.686

5.  Data-Driven Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters.

Authors:  Sophie M Kantonen; Hari S Muddana; Michael Schauperl; Niel M Henriksen; Lee-Ping Wang; Michael K Gilson
Journal:  J Chem Theory Comput       Date:  2020-01-17       Impact factor: 6.006

6.  Hydration Free Energies in the FreeSolv Database Calculated with Polarized Iterative Hirshfeld Charges.

Authors:  Maximiliano Riquelme; Alejandro Lara; David L Mobley; Toon Verstraelen; Adelio R Matamala; Esteban Vöhringer-Martinez
Journal:  J Chem Inf Model       Date:  2018-08-31       Impact factor: 4.956

7.  Non-covalent interactions from a Quantum Chemical Topology perspective.

Authors:  Paul L A Popelier
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

8.  A collection of forcefield precursors for metal-organic frameworks.

Authors:  Taoyi Chen; Thomas A Manz
Journal:  RSC Adv       Date:  2019-11-13       Impact factor: 4.036

9.  SAMPL6 Octanol-water partition coefficients from alchemical free energy calculations with MBIS atomic charges.

Authors:  Maximiliano Riquelme; Esteban Vöhringer-Martinez
Journal:  J Comput Aided Mol Des       Date:  2020-01-20       Impact factor: 3.686

10.  Thermodynamic Insight in the High-Pressure Behavior of UiO-66: Effect of Linker Defects and Linker Expansion.

Authors:  Sven M J Rogge; Jelle Wieme; Louis Vanduyfhuys; Steven Vandenbrande; Guillaume Maurin; Toon Verstraelen; Michel Waroquier; Veronique Van Speybroeck
Journal:  Chem Mater       Date:  2016-07-25       Impact factor: 9.811

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