Literature DB >> 35539031

A collection of forcefield precursors for metal-organic frameworks.

Taoyi Chen1, Thomas A Manz1.   

Abstract

A host of important performance properties for metal-organic frameworks (MOFs) and other complex materials can be calculated by modeling statistical ensembles. The principle challenge is to develop accurate and computationally efficient interaction models for these simulations. Two major approaches are (i) ab initio molecular dynamics in which the interaction model is provided by an exchange-correlation theory (e.g., DFT + dispersion functional) and (ii) molecular mechanics in which the interaction model is a parameterized classical force field. The first approach requires further development to improve computational speed. The second approach requires further development to automate accurate forcefield parameterization. Because of the extreme chemical diversity across thousands of MOF structures, this problem is still mostly unsolved today. For example, here we show structures in the 2014 CoRE MOF database contain more than 8 thousand different atom types based on first and second neighbors. Our results showed that atom types based on both first and second neighbors adequately capture the chemical environment, but atom types based on only first neighbors do not. For 3056 MOFs, we used density functional theory (DFT) followed by DDEC6 atomic population analysis to extract a host of important forcefield precursors: partial atomic charges; atom-in-material (AIM) C6, C8, and C10 dispersion coefficients; AIM dipole and quadrupole moments; various AIM polarizabilities; quantum Drude oscillator parameters; AIM electron cloud parameters; etc. Electrostatic parameters were validated through comparisons to the DFT-computed electrostatic potential. These forcefield precursors should find widespread applications to developing MOF force fields. This journal is © The Royal Society of Chemistry.

Entities:  

Year:  2019        PMID: 35539031      PMCID: PMC9075174          DOI: 10.1039/c9ra07327b

Source DB:  PubMed          Journal:  RSC Adv        ISSN: 2046-2069            Impact factor:   4.036


  67 in total

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8.  Metal inorganic frameworks: dynamic flexible architecture with extended pore order built from [Se(3)](2-) linkers and [Re(6)Se(6)Br(8)](2-) clusters.

Authors:  Nan Ding; Gerasimos S Armatas; Mercouri G Kanatzidis
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9.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

10.  Hydrogen atoms can be located accurately and precisely by x-ray crystallography.

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  2 in total

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Journal:  RSC Adv       Date:  2020-12-15       Impact factor: 4.036

2.  Identifying misbonded atoms in the 2019 CoRE metal-organic framework database.

Authors:  Taoyi Chen; Thomas A Manz
Journal:  RSC Adv       Date:  2020-07-20       Impact factor: 4.036

  2 in total

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