| Literature DB >> 27375879 |
Enis Nadia Md Yusof1, Mukesh M Jotani2, Edward R T Tiekink3, Thahira B S A Ravoof1.
Abstract
The title di-thio-carbazate ester, C16H16N2O2S2, comprises two almost planar residues, i.e. the phenyl ring and the remaining 14 non-H atoms (r.m.s. deviation = 0.0410 Å). These are orientated perpendicularly, forming a dihedral angle of 82.72 (5)°. An intra-molecular hy-droxy-O-H⋯N(imine) hydrogen bond, leading to an S(6) loop, is noted. An analysis of the geometric parameters is consistent with the mol-ecule existing as the thione tautomer, and the conformation about the C=N bond is E. The thione S and imine H atoms lie to the same side of the mol-ecule, facilitating the formation of inter-molecular N-H⋯S hydrogen bonds leading to eight-membered {⋯HNCS}2 synthons in the crystal. These aggregates are connected by phenyl-C-H⋯O(hy-droxy) inter-actions into a supra-molecular layer in the bc plane; these stack with no directional inter-actions between them. An analysis of the Hirshfeld surface confirms the nature of the inter-molecular inter-actions.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; dithiocarbazate ester; hydrogen bonding
Year: 2016 PMID: 27375879 PMCID: PMC4910345 DOI: 10.1107/S2056989016004291
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 0.84 (2) | 1.90 (2) | 2.639 (2) | 146 (2) |
| N1—H1 | 0.88 (2) | 2.47 (2) | 3.3351 (18) | 168 (2) |
| C6—H6⋯O1ii | 0.95 | 2.51 | 3.453 (3) | 170 |
Symmetry codes: (i) ; (ii) .
Figure 2Molecular packing in the title compound: (a) a perspective view of the supramolecular layer sustained by thioamide-N—H⋯S(thione) and phenyl-C—H⋯O(hydroxy) interactions and, (b) a view of the unit-cell contents shown in projection down the b axis, highlighting one layer in space-filling mode. The N—H⋯S and C—H⋯O interactions are shown as blue and orange dashed lines, respectively. For (a), non-interacting H atoms have been omitted.
Figure 3View of the Hirshfeld surface mapped over d norm.
Figure 4View of the Hirshfeld surface mapped over the electrostatic potential.
Figure 5Hirshfeld surface mapped over d norm showing hydrogen-bonding interactions with neighbouring molecules.
Figure 6The two-dimensional fingerprint plots for (a) all interactions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) S⋯H/H⋯S, (e) C⋯H/H⋯C and (f) C⋯C interactions.
Major percentage contribution of the different intermolecular interactions to the Hirshfeld surface of the title compound
| Contact | % |
|---|---|
| H⋯H | 43.4 |
| O⋯H/H⋯O | 10.3 |
| S⋯H/H⋯S | 14.4 |
| C⋯H/H⋯C | 21.3 |
| N⋯H/H⋯N | 0.8 |
| C⋯C | 2.5 |
| S⋯S | 0.4 |
| C⋯N/N⋯C | 2.9 |
| S⋯O/O⋯S | 1.4 |
| S⋯N/N⋯S | 1.4 |
| C⋯S/S⋯C | 0.9 |
Additional short interatomic contacts (Å) for the title compound
| Interaction | distance | symmetry operation |
|---|---|---|
| H8⋯H16 | 2.25 | − |
| C6⋯H16 | 2.86 |
|
| O1⋯H16 | 2.70 |
|
| C11⋯H16 | 2.78 |
|
| C12⋯H16 | 2.89 |
|
Figure 7View of the Hirshfeld surface mapped over curvedness.
Enrichment ratios (ER) for the title compound.
| Interaction | ER |
|---|---|
| H⋯H | 0.97 |
| O⋯H/H⋯O | 1.28 |
| S⋯H/H⋯S | 1.14 |
| C⋯C | 1.09 |
| C⋯H/H⋯C | 1.05 |
| S⋯O/O⋯S | 1.24 |
| S⋯S | 0.45 |
| C⋯S/S⋯C | 0.31 |
Experimental details
| Crystal data | |
| Chemical formula | C16H16N2O2S2 |
|
| 332.43 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 20.7896 (10), 4.6965 (2), 32.5217 (13) |
| β (°) | 95.004 (4) |
|
| 3163.3 (2) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.35 |
| Crystal size (mm) | 0.25 × 0.15 × 0.07 |
| Data collection | |
| Diffractometer | Agilent Xcalibur Eos Gemini |
| Absorption correction | Multi-scan ( |
|
| 0.87, 0.98 |
| No. of measured, independent and observed [ | 6979, 3270, 2595 |
|
| 0.033 |
| (sin θ/λ)max (Å−1) | 0.628 |
| Refinement | |
|
| 0.041, 0.097, 1.06 |
| No. of reflections | 3270 |
| No. of parameters | 206 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.33, −0.24 |
Computer programs: CrysAlis PRO (Agilent, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸), publCIF (Westrip, 2010 ▸).
| C16H16N2O2S2 | |
| Monoclinic, | Mo |
| Cell parameters from 2185 reflections | |
| θ = 2–29° | |
| µ = 0.35 mm−1 | |
| β = 95.004 (4)° | |
| Plate, light-yellow | |
| 0.25 × 0.15 × 0.07 mm |
| Agilent Xcalibur Eos Gemini diffractometer | 3270 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2595 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 26.5°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 6979 measured reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.002 | |
| Δρmax = 0.33 e Å−3 | |
| 3270 reflections | Δρmin = −0.24 e Å−3 |
| 206 parameters |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.22247 (2) | 0.46299 (12) | 0.61684 (2) | 0.02185 (15) | |
| S2 | 0.17478 (3) | 0.80851 (12) | 0.54164 (2) | 0.02258 (15) | |
| O1 | 0.35672 (7) | −0.0373 (3) | 0.63252 (4) | 0.0239 (3) | |
| H1O | 0.3342 (10) | 0.086 (4) | 0.6194 (7) | 0.036* | |
| O2 | 0.43677 (8) | −0.4115 (3) | 0.66547 (5) | 0.0305 (4) | |
| N1 | 0.27458 (8) | 0.4630 (4) | 0.54712 (5) | 0.0203 (4) | |
| H1N | 0.2819 (10) | 0.519 (5) | 0.5223 (4) | 0.024* | |
| N2 | 0.31479 (8) | 0.2682 (4) | 0.56753 (5) | 0.0194 (4) | |
| C1 | 0.22604 (9) | 0.5777 (4) | 0.56594 (6) | 0.0179 (4) | |
| C2 | 0.15287 (10) | 0.6579 (5) | 0.63209 (6) | 0.0237 (5) | |
| H2A | 0.1579 | 0.8639 | 0.6268 | 0.028* | |
| H2B | 0.1130 | 0.5907 | 0.6161 | 0.028* | |
| C3 | 0.14873 (10) | 0.6059 (5) | 0.67741 (6) | 0.0223 (5) | |
| C4 | 0.18779 (13) | 0.7499 (6) | 0.70649 (8) | 0.0395 (6) | |
| H4 | 0.2181 | 0.8838 | 0.6979 | 0.047* | |
| C5 | 0.18365 (13) | 0.7029 (6) | 0.74845 (8) | 0.0432 (7) | |
| H5 | 0.2108 | 0.8059 | 0.7682 | 0.052* | |
| C6 | 0.14056 (12) | 0.5086 (5) | 0.76139 (7) | 0.0356 (6) | |
| H6 | 0.1381 | 0.4735 | 0.7900 | 0.043* | |
| C7 | 0.10141 (14) | 0.3670 (7) | 0.73262 (8) | 0.0502 (8) | |
| H7 | 0.0708 | 0.2346 | 0.7413 | 0.060* | |
| C8 | 0.10538 (13) | 0.4127 (6) | 0.69076 (8) | 0.0404 (7) | |
| H8 | 0.0779 | 0.3096 | 0.6712 | 0.048* | |
| C9 | 0.35930 (10) | 0.1553 (4) | 0.54759 (6) | 0.0192 (4) | |
| H9 | 0.3635 | 0.2118 | 0.5199 | 0.023* | |
| C10 | 0.40308 (9) | −0.0564 (4) | 0.56664 (6) | 0.0188 (4) | |
| C11 | 0.40002 (9) | −0.1423 (4) | 0.60766 (6) | 0.0191 (4) | |
| C12 | 0.44376 (10) | −0.3469 (5) | 0.62508 (7) | 0.0236 (5) | |
| C13 | 0.48986 (10) | −0.4610 (5) | 0.60167 (7) | 0.0282 (5) | |
| H13 | 0.5196 | −0.5984 | 0.6134 | 0.034* | |
| C14 | 0.49292 (11) | −0.3747 (5) | 0.56070 (7) | 0.0286 (5) | |
| H14 | 0.5246 | −0.4541 | 0.5448 | 0.034* | |
| C15 | 0.45042 (10) | −0.1762 (5) | 0.54345 (7) | 0.0239 (5) | |
| H15 | 0.4529 | −0.1189 | 0.5156 | 0.029* | |
| C16 | 0.47583 (12) | −0.6366 (5) | 0.68359 (8) | 0.0346 (6) | |
| H16A | 0.4679 | −0.8109 | 0.6674 | 0.052* | |
| H16B | 0.4649 | −0.6693 | 0.7119 | 0.052* | |
| H16C | 0.5215 | −0.5840 | 0.6839 | 0.052* |
| S1 | 0.0221 (3) | 0.0271 (3) | 0.0169 (3) | 0.0071 (2) | 0.0051 (2) | 0.0040 (2) |
| S2 | 0.0225 (3) | 0.0273 (3) | 0.0180 (3) | 0.0075 (2) | 0.0024 (2) | 0.0047 (2) |
| O1 | 0.0258 (8) | 0.0281 (9) | 0.0183 (7) | 0.0072 (7) | 0.0044 (6) | 0.0034 (7) |
| O2 | 0.0399 (9) | 0.0269 (9) | 0.0238 (8) | 0.0075 (7) | −0.0035 (7) | 0.0064 (7) |
| N1 | 0.0206 (9) | 0.0253 (10) | 0.0154 (8) | 0.0044 (8) | 0.0040 (7) | 0.0058 (8) |
| N2 | 0.0180 (8) | 0.0208 (9) | 0.0194 (9) | 0.0039 (7) | 0.0024 (7) | 0.0026 (8) |
| C1 | 0.0181 (10) | 0.0179 (10) | 0.0176 (10) | −0.0018 (8) | 0.0016 (8) | 0.0000 (9) |
| C2 | 0.0239 (11) | 0.0257 (12) | 0.0222 (11) | 0.0080 (9) | 0.0061 (9) | 0.0038 (10) |
| C3 | 0.0234 (11) | 0.0231 (12) | 0.0212 (11) | 0.0093 (9) | 0.0059 (9) | 0.0005 (9) |
| C4 | 0.0430 (15) | 0.0457 (16) | 0.0293 (13) | −0.0093 (13) | 0.0010 (12) | 0.0040 (12) |
| C5 | 0.0523 (17) | 0.0504 (17) | 0.0258 (13) | −0.0002 (14) | −0.0034 (12) | −0.0029 (13) |
| C6 | 0.0411 (14) | 0.0470 (16) | 0.0200 (11) | 0.0152 (12) | 0.0103 (11) | 0.0032 (12) |
| C7 | 0.0549 (18) | 0.066 (2) | 0.0310 (14) | −0.0188 (16) | 0.0104 (13) | 0.0078 (14) |
| C8 | 0.0493 (16) | 0.0480 (16) | 0.0244 (12) | −0.0172 (13) | 0.0063 (12) | −0.0001 (12) |
| C9 | 0.0225 (10) | 0.0203 (11) | 0.0150 (10) | −0.0017 (9) | 0.0028 (9) | 0.0010 (9) |
| C10 | 0.0184 (10) | 0.0170 (10) | 0.0210 (10) | −0.0013 (9) | 0.0015 (8) | −0.0030 (9) |
| C11 | 0.0185 (10) | 0.0189 (11) | 0.0197 (10) | −0.0013 (8) | 0.0004 (9) | −0.0039 (9) |
| C12 | 0.0264 (11) | 0.0194 (11) | 0.0239 (11) | −0.0004 (9) | −0.0046 (9) | −0.0011 (9) |
| C13 | 0.0239 (11) | 0.0238 (12) | 0.0355 (13) | 0.0068 (10) | −0.0067 (10) | −0.0046 (11) |
| C14 | 0.0228 (11) | 0.0301 (13) | 0.0331 (13) | 0.0063 (10) | 0.0035 (10) | −0.0077 (11) |
| C15 | 0.0223 (11) | 0.0269 (12) | 0.0228 (11) | 0.0012 (9) | 0.0041 (9) | −0.0030 (10) |
| C16 | 0.0411 (14) | 0.0237 (13) | 0.0363 (14) | −0.0008 (11) | −0.0129 (12) | 0.0070 (11) |
| S1—C1 | 1.749 (2) | C6—C7 | 1.359 (4) |
| S1—C2 | 1.817 (2) | C6—H6 | 0.9500 |
| S2—C1 | 1.670 (2) | C7—C8 | 1.388 (3) |
| O1—C11 | 1.354 (2) | C7—H7 | 0.9500 |
| O1—H1O | 0.836 (10) | C8—H8 | 0.9500 |
| O2—C12 | 1.368 (3) | C9—C10 | 1.450 (3) |
| O2—C16 | 1.429 (3) | C9—H9 | 0.9500 |
| N1—C1 | 1.338 (2) | C10—C11 | 1.401 (3) |
| N1—N2 | 1.371 (2) | C10—C15 | 1.408 (3) |
| N1—H1N | 0.874 (9) | C11—C12 | 1.408 (3) |
| N2—C9 | 1.290 (2) | C12—C13 | 1.383 (3) |
| C2—C3 | 1.504 (3) | C13—C14 | 1.400 (3) |
| C2—H2A | 0.9900 | C13—H13 | 0.9500 |
| C2—H2B | 0.9900 | C14—C15 | 1.370 (3) |
| C3—C4 | 1.370 (3) | C14—H14 | 0.9500 |
| C3—C8 | 1.376 (3) | C15—H15 | 0.9500 |
| C4—C5 | 1.392 (3) | C16—H16A | 0.9800 |
| C4—H4 | 0.9500 | C16—H16B | 0.9800 |
| C5—C6 | 1.370 (4) | C16—H16C | 0.9800 |
| C5—H5 | 0.9500 | ||
| C1—S1—C2 | 101.75 (10) | C3—C8—C7 | 120.5 (2) |
| C11—O1—H1O | 108.6 (16) | C3—C8—H8 | 119.7 |
| C12—O2—C16 | 117.13 (17) | C7—C8—H8 | 119.7 |
| C1—N1—N2 | 119.96 (16) | N2—C9—C10 | 121.21 (18) |
| C1—N1—H1N | 120.0 (15) | N2—C9—H9 | 119.4 |
| N2—N1—H1N | 120.0 (15) | C10—C9—H9 | 119.4 |
| C9—N2—N1 | 117.70 (17) | C11—C10—C15 | 119.1 (2) |
| N1—C1—S2 | 121.37 (15) | C11—C10—C9 | 121.72 (18) |
| N1—C1—S1 | 113.89 (15) | C15—C10—C9 | 119.15 (18) |
| S2—C1—S1 | 124.74 (11) | O1—C11—C10 | 123.47 (19) |
| C3—C2—S1 | 107.49 (14) | O1—C11—C12 | 116.60 (18) |
| C3—C2—H2A | 110.2 | C10—C11—C12 | 119.92 (18) |
| S1—C2—H2A | 110.2 | O2—C12—C13 | 125.4 (2) |
| C3—C2—H2B | 110.2 | O2—C12—C11 | 114.77 (18) |
| S1—C2—H2B | 110.2 | C13—C12—C11 | 119.8 (2) |
| H2A—C2—H2B | 108.5 | C12—C13—C14 | 120.2 (2) |
| C4—C3—C8 | 118.2 (2) | C12—C13—H13 | 119.9 |
| C4—C3—C2 | 121.0 (2) | C14—C13—H13 | 119.9 |
| C8—C3—C2 | 120.8 (2) | C15—C14—C13 | 120.4 (2) |
| C3—C4—C5 | 121.0 (2) | C15—C14—H14 | 119.8 |
| C3—C4—H4 | 119.5 | C13—C14—H14 | 119.8 |
| C5—C4—H4 | 119.5 | C14—C15—C10 | 120.6 (2) |
| C6—C5—C4 | 120.3 (3) | C14—C15—H15 | 119.7 |
| C6—C5—H5 | 119.8 | C10—C15—H15 | 119.7 |
| C4—C5—H5 | 119.8 | O2—C16—H16A | 109.5 |
| C7—C6—C5 | 118.8 (2) | O2—C16—H16B | 109.5 |
| C7—C6—H6 | 120.6 | H16A—C16—H16B | 109.5 |
| C5—C6—H6 | 120.6 | O2—C16—H16C | 109.5 |
| C6—C7—C8 | 121.1 (3) | H16A—C16—H16C | 109.5 |
| C6—C7—H7 | 119.4 | H16B—C16—H16C | 109.5 |
| C8—C7—H7 | 119.4 |
| H··· | ||||
| O1—H1 | 0.84 (2) | 1.90 (2) | 2.639 (2) | 146 (2) |
| N1—H1 | 0.88 (2) | 2.47 (2) | 3.3351 (18) | 168 (2) |
| C6—H6···O1ii | 0.95 | 2.51 | 3.453 (3) | 170 |