Literature DB >> 22220032

Benzyl (E)-3-(2-bromo-5-meth-oxy-benzyl-idene)dithio-carbazate.

Zheng Fan, Yan-Lan Huang, Zhao Wang, Han-Qi Guo, Shang Shan.   

Abstract

The title compound, C(16)H(15)BrN(2)OS(2), was obtained from the condensation reaction of benzyl dithio-carbazate and 2-bromo-5-meth-oxy-lbenzaldehyde. In the mol-ecule, the bromo-meth-oxy-phenyl ring and dithio-carbazate fragment are located on the opposite sides of the C=N double bond, showing the E conformation. The dithio-carbazate fragment is approximately planar (r.m.s deviation 0.0187 Å); its mean plane is oriented with respect to the bromo-meth-oxy-phenyl and phenyl rings at 7.60 (12) and 60.08 (9)°, respectively. In the crystal, inversion dimers linked by pairs of N-H⋯S hydrogen bonds occur. A short Br⋯Br contact of 3.5526 (12) Å is observed in the crystal structure.

Entities:  

Year:  2011        PMID: 22220032      PMCID: PMC3247414          DOI: 10.1107/S1600536811042826

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential application of hydrazone and its derivatives in the biological field, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶). For related structures, see: Shan et al. (2008a ▶,b ▶). For the synthesis, see: Hu et al. (2001 ▶).

Experimental

Crystal data

C16H15BrN2OS2 M = 395.33 Triclinic, a = 6.260 (3) Å b = 11.889 (5) Å c = 12.235 (5) Å α = 111.931 (5)° β = 91.725 (4)° γ = 99.771 (4)° V = 828.1 (6) Å3 Z = 2 Mo Kα radiation μ = 2.74 mm−1 T = 294 K 0.32 × 0.28 × 0.19 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.56, T max = 0.72 5637 measured reflections 2988 independent reflections 2379 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.069 S = 1.02 2988 reflections 201 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.30 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042826/xu5353sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042826/xu5353Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042826/xu5353Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15BrN2OS2Z = 2
Mr = 395.33F(000) = 400
Triclinic, P1Dx = 1.586 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.260 (3) ÅCell parameters from 2988 reflections
b = 11.889 (5) Åθ = 3.3–25.2°
c = 12.235 (5) ŵ = 2.74 mm1
α = 111.931 (5)°T = 294 K
β = 91.725 (4)°Block, yellow
γ = 99.771 (4)°0.32 × 0.28 × 0.19 mm
V = 828.1 (6) Å3
Rigaku R-AXIS RAPID IP diffractometer2988 independent reflections
Radiation source: fine-focus sealed tube2379 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 25.2°, θmin = 3.3°
ω scansh = −5→7
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −14→11
Tmin = 0.56, Tmax = 0.72l = −14→14
5637 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0276P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2988 reflectionsΔρmax = 0.25 e Å3
201 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0123 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br0.33444 (5)0.11365 (3)0.04397 (2)0.05700 (14)
S11.10460 (10)0.70610 (6)0.10224 (6)0.0458 (2)
S20.72189 (10)0.76733 (6)0.24288 (6)0.0423 (2)
N10.5742 (3)0.51783 (19)0.15272 (15)0.0336 (5)
N20.7654 (3)0.54749 (19)0.10904 (16)0.0356 (5)
H20.81970.49050.05800.043*
O1−0.0891 (3)0.51964 (18)0.35686 (15)0.0501 (5)
C10.1988 (4)0.2431 (2)0.13964 (19)0.0366 (6)
C20.0116 (5)0.2108 (3)0.1861 (2)0.0487 (8)
H2A−0.04590.12780.16820.058*
C3−0.0907 (4)0.2999 (3)0.2586 (2)0.0465 (7)
H3−0.21690.27780.29000.056*
C4−0.0045 (4)0.4226 (3)0.2843 (2)0.0370 (6)
C50.1811 (4)0.4548 (2)0.23569 (19)0.0341 (6)
H50.23560.53780.25180.041*
C60.2875 (4)0.3660 (2)0.16346 (19)0.0314 (6)
C70.4884 (4)0.4042 (2)0.11732 (19)0.0356 (6)
H70.55250.34530.06230.043*
C80.8663 (4)0.6654 (2)0.14642 (18)0.0319 (6)
C90.8899 (4)0.9158 (2)0.2670 (2)0.0414 (7)
H9A1.03060.92410.30780.050*
H9B0.91320.92330.19180.050*
C100.7736 (4)1.0146 (2)0.3410 (2)0.0380 (6)
C110.5706 (5)1.0236 (3)0.3006 (2)0.0489 (8)
H110.50480.96770.22670.059*
C120.4647 (5)1.1145 (3)0.3690 (3)0.0587 (8)
H120.32991.12100.34040.070*
C130.5599 (6)1.1955 (3)0.4797 (3)0.0624 (9)
H130.48691.25520.52690.075*
C140.7606 (6)1.1886 (3)0.5205 (2)0.0636 (9)
H140.82501.24410.59480.076*
C150.8682 (5)1.0989 (3)0.4509 (2)0.0487 (7)
H151.00591.09530.47860.058*
C16−0.2653 (5)0.4938 (3)0.4202 (2)0.0604 (9)
H16A−0.39160.44750.36550.091*
H16B−0.29730.57000.47440.091*
H16C−0.22600.44640.46360.091*
U11U22U33U12U13U23
Br0.0715 (2)0.03141 (19)0.0601 (2)0.01393 (14)0.01395 (15)0.00643 (14)
S10.0383 (4)0.0355 (4)0.0532 (4)0.0005 (3)0.0211 (3)0.0069 (3)
S20.0413 (4)0.0289 (4)0.0511 (4)0.0051 (3)0.0214 (3)0.0084 (3)
N10.0292 (10)0.0319 (13)0.0367 (10)0.0026 (9)0.0078 (9)0.0109 (9)
N20.0333 (11)0.0297 (13)0.0390 (11)0.0034 (9)0.0146 (9)0.0083 (9)
O10.0423 (11)0.0511 (13)0.0580 (11)0.0155 (9)0.0225 (9)0.0181 (9)
C10.0422 (15)0.0286 (15)0.0355 (13)0.0030 (12)0.0031 (11)0.0101 (11)
C20.0553 (17)0.0332 (17)0.0505 (15)−0.0061 (14)0.0095 (14)0.0140 (13)
C30.0389 (15)0.0474 (19)0.0507 (15)−0.0051 (13)0.0116 (13)0.0214 (14)
C40.0309 (13)0.0432 (17)0.0362 (13)0.0080 (12)0.0038 (11)0.0142 (12)
C50.0311 (13)0.0265 (14)0.0412 (13)0.0006 (11)0.0028 (11)0.0113 (11)
C60.0302 (13)0.0300 (15)0.0313 (11)0.0030 (11)0.0013 (10)0.0102 (10)
C70.0378 (14)0.0294 (15)0.0347 (12)0.0050 (11)0.0092 (11)0.0070 (11)
C80.0327 (13)0.0329 (15)0.0276 (11)0.0047 (11)0.0044 (10)0.0096 (10)
C90.0414 (15)0.0293 (15)0.0476 (14)0.0016 (12)0.0134 (12)0.0097 (12)
C100.0443 (15)0.0262 (15)0.0444 (14)0.0047 (12)0.0165 (12)0.0146 (12)
C110.0441 (16)0.0421 (18)0.0547 (16)0.0045 (13)0.0117 (13)0.0133 (13)
C120.0470 (17)0.054 (2)0.084 (2)0.0160 (15)0.0236 (17)0.0319 (18)
C130.085 (2)0.043 (2)0.068 (2)0.0282 (17)0.0390 (19)0.0228 (16)
C140.102 (3)0.0402 (19)0.0437 (16)0.0218 (18)0.0107 (17)0.0072 (14)
C150.0603 (18)0.0353 (17)0.0466 (15)0.0094 (14)0.0060 (14)0.0113 (13)
C160.0449 (16)0.085 (3)0.0553 (16)0.0222 (16)0.0221 (14)0.0258 (16)
Br—C11.902 (3)C6—C71.465 (3)
S1—C81.658 (3)C7—H70.9300
S2—C81.745 (2)C9—C101.505 (4)
S2—C91.808 (3)C9—H9A0.9700
N1—C71.267 (3)C9—H9B0.9700
N1—N21.370 (3)C10—C151.381 (3)
N2—C81.333 (3)C10—C111.385 (4)
N2—H20.8600C11—C121.382 (4)
O1—C41.368 (3)C11—H110.9300
O1—C161.424 (3)C12—C131.378 (4)
C1—C21.377 (4)C12—H120.9300
C1—C61.387 (4)C13—C141.365 (5)
C2—C31.372 (4)C13—H130.9300
C2—H2A0.9300C14—C151.384 (4)
C3—C41.378 (4)C14—H140.9300
C3—H30.9300C15—H150.9300
C4—C51.382 (3)C16—H16A0.9600
C5—C61.385 (3)C16—H16B0.9600
C5—H50.9300C16—H16C0.9600
C8—S2—C9101.87 (12)C10—C9—S2107.86 (17)
C7—N1—N2116.98 (19)C10—C9—H9A110.1
C8—N2—N1119.40 (18)S2—C9—H9A110.1
C8—N2—H2120.3C10—C9—H9B110.1
N1—N2—H2120.3S2—C9—H9B110.1
C4—O1—C16118.1 (2)H9A—C9—H9B108.4
C2—C1—C6121.2 (2)C15—C10—C11118.5 (2)
C2—C1—Br117.7 (2)C15—C10—C9120.4 (2)
C6—C1—Br121.16 (18)C11—C10—C9121.0 (2)
C3—C2—C1120.6 (3)C12—C11—C10120.8 (3)
C3—C2—H2A119.7C12—C11—H11119.6
C1—C2—H2A119.7C10—C11—H11119.6
C2—C3—C4119.3 (2)C13—C12—C11119.7 (3)
C2—C3—H3120.3C13—C12—H12120.2
C4—C3—H3120.3C11—C12—H12120.2
O1—C4—C3124.7 (2)C14—C13—C12120.3 (3)
O1—C4—C5115.2 (2)C14—C13—H13119.8
C3—C4—C5120.0 (2)C12—C13—H13119.8
C4—C5—C6121.3 (2)C13—C14—C15119.9 (3)
C4—C5—H5119.3C13—C14—H14120.1
C6—C5—H5119.3C15—C14—H14120.1
C5—C6—C1117.6 (2)C10—C15—C14120.8 (3)
C5—C6—C7119.6 (2)C10—C15—H15119.6
C1—C6—C7122.8 (2)C14—C15—H15119.6
N1—C7—C6119.7 (2)O1—C16—H16A109.5
N1—C7—H7120.1O1—C16—H16B109.5
C6—C7—H7120.1H16A—C16—H16B109.5
N2—C8—S1121.55 (17)O1—C16—H16C109.5
N2—C8—S2113.22 (17)H16A—C16—H16C109.5
S1—C8—S2125.23 (15)H16B—C16—H16C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.862.563.402 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.862.563.402 (3)167

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Benzyl 3-[(E)-furfuryl-idene]dithio-carbazate.

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