Literature DB >> 22220028

Benzyl (E)-3-(4-meth-oxy-benzyl-idene)dithio-carbazate.

Zheng Fan, Yan-Lan Huang, Zhao Wang, Han-Qi Guo, Shang Shan.   

Abstract

The title compound, C(16)H(16)N(2)OS(2), was obtained from a condensation reaction of benzyl dithio-carbazate and 4-meth-oxy-benzaldehyde. In the mol-ecule, the meth-oxy-phenyl ring and dithio-carbazate fragment are located on opposite sides of the C=N double bond, showing an E configuration. The dithio-carbazate fragment is approximately planar (r.m.s. deviation = 0.0052 Å); its mean plane is oriented at dihedral angles of 8.19 (15) and 85.70 (13)°, respectively, to the meth-oxy-phenyl and phenyl rings. Inter-molecular N-H⋯S hydrogen bonds and weak C-H⋯π inter-actions are observed in the crystal structure.

Entities:  

Year:  2011        PMID: 22220028      PMCID: PMC3247410          DOI: 10.1107/S1600536811042140

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hydrazone and its derivatives in the biological field, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶). For related structures, see: Shan et al. (2008a ▶,b ▶). For the synthesis, see: Hu et al. (2001 ▶).

Experimental

Crystal data

C16H16N2OS2 M = 316.43 Monoclinic, a = 10.267 (5) Å b = 5.150 (2) Å c = 31.686 (11) Å β = 97.141 (5)° V = 1662.4 (12) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 294 K 0.32 × 0.25 × 0.23 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.84, T max = 0.92 6025 measured reflections 2982 independent reflections 1869 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.129 S = 1.04 2982 reflections 191 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042140/xu5352sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042140/xu5352Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042140/xu5352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2OS2F(000) = 664
Mr = 316.43Dx = 1.264 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2982 reflections
a = 10.267 (5) Åθ = 3.4–25.2°
b = 5.150 (2) ŵ = 0.32 mm1
c = 31.686 (11) ÅT = 294 K
β = 97.141 (5)°Block, colorless
V = 1662.4 (12) Å30.32 × 0.25 × 0.23 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer2982 independent reflections
Radiation source: fine-focus sealed tube1869 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 10.0 pixels mm-1θmax = 25.2°, θmin = 3.5°
ω scansh = −12→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −5→6
Tmin = 0.84, Tmax = 0.92l = −31→37
6025 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0512P)2] where P = (Fo2 + 2Fc2)/3
2982 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.65124 (8)0.64526 (18)0.54959 (2)0.0628 (3)
S20.57408 (9)0.40404 (17)0.63003 (2)0.0631 (3)
O1−0.0078 (2)−0.7274 (5)0.62062 (8)0.0810 (7)
N10.4039 (2)0.1129 (5)0.57509 (7)0.0545 (7)
N20.4768 (2)0.2797 (5)0.55381 (7)0.0552 (7)
H20.46650.28150.52650.066*
C10.2443 (3)−0.2240 (6)0.56941 (8)0.0491 (7)
C20.1678 (3)−0.3916 (6)0.54309 (9)0.0582 (9)
H2A0.1740−0.38870.51410.070*
C30.0825 (3)−0.5632 (6)0.55848 (10)0.0608 (8)
H30.0315−0.67380.54000.073*
C40.0734 (3)−0.5699 (6)0.60140 (10)0.0572 (8)
C50.1509 (3)−0.4053 (7)0.62824 (10)0.0663 (9)
H50.1456−0.41050.65730.080*
C60.2355 (3)−0.2346 (6)0.61278 (9)0.0596 (9)
H60.2871−0.12550.63130.072*
C70.3302 (3)−0.0417 (6)0.55184 (9)0.0553 (8)
H70.3314−0.03760.52260.066*
C80.5635 (3)0.4391 (6)0.57512 (8)0.0498 (8)
C90.6968 (4)0.6468 (7)0.64781 (9)0.0725 (10)
H9A0.77780.61040.63610.087*
H9B0.66620.81770.63830.087*
C100.7200 (5)0.6388 (8)0.69529 (11)0.0815 (12)
C110.8198 (6)0.4920 (11)0.71552 (14)0.1309 (19)
H110.87120.39390.69930.157*
C120.8464 (8)0.4854 (16)0.7592 (2)0.189 (4)
H120.91530.38700.77270.226*
C130.7687 (13)0.6270 (17)0.7815 (2)0.199 (5)
H130.78300.61730.81100.239*
C140.6712 (12)0.7826 (15)0.7635 (2)0.212 (5)
H140.62310.88540.78010.255*
C150.6444 (7)0.7838 (11)0.71840 (14)0.138 (2)
H150.57580.88300.70490.166*
C16−0.0915 (4)−0.8990 (7)0.59433 (13)0.0942 (13)
H16A−0.1487−0.79970.57410.141*
H16B−0.1431−0.99910.61170.141*
H16C−0.0392−1.01350.57950.141*
U11U22U33U12U13U23
S10.0604 (6)0.0731 (6)0.0556 (5)−0.0213 (5)0.0101 (4)0.0138 (4)
S20.0699 (6)0.0685 (6)0.0511 (4)−0.0216 (5)0.0086 (4)0.0112 (4)
O10.0753 (19)0.0729 (16)0.0980 (16)−0.0258 (14)0.0229 (14)0.0156 (14)
N10.0472 (16)0.0563 (16)0.0604 (14)−0.0115 (14)0.0078 (12)0.0121 (13)
N20.0510 (17)0.0639 (17)0.0514 (13)−0.0149 (14)0.0087 (12)0.0088 (13)
C10.0451 (19)0.0492 (18)0.0530 (17)−0.0071 (15)0.0060 (14)0.0066 (14)
C20.056 (2)0.067 (2)0.0508 (16)−0.0112 (18)0.0042 (14)0.0004 (16)
C30.053 (2)0.058 (2)0.069 (2)−0.0126 (17)−0.0002 (15)−0.0007 (17)
C40.050 (2)0.0486 (19)0.074 (2)−0.0096 (16)0.0093 (16)0.0115 (17)
C50.074 (2)0.073 (2)0.0528 (17)−0.016 (2)0.0123 (16)0.0100 (17)
C60.063 (2)0.060 (2)0.0542 (18)−0.0183 (18)0.0026 (15)−0.0033 (16)
C70.0455 (19)0.064 (2)0.0565 (17)−0.0062 (17)0.0073 (14)0.0112 (16)
C80.0430 (18)0.0526 (19)0.0544 (16)−0.0034 (15)0.0088 (14)0.0089 (15)
C90.088 (3)0.071 (2)0.0579 (18)−0.030 (2)0.0062 (17)0.0061 (17)
C100.120 (4)0.066 (2)0.057 (2)−0.034 (2)0.006 (2)0.004 (2)
C110.157 (5)0.132 (4)0.094 (3)−0.011 (4)−0.023 (3)0.025 (3)
C120.271 (10)0.173 (7)0.099 (4)−0.046 (7)−0.069 (5)0.040 (5)
C130.408 (15)0.124 (7)0.064 (4)−0.114 (8)0.031 (6)−0.006 (4)
C140.433 (16)0.110 (6)0.105 (5)−0.051 (7)0.080 (7)−0.021 (4)
C150.228 (7)0.119 (4)0.073 (3)−0.013 (4)0.040 (4)−0.005 (3)
C160.072 (3)0.067 (3)0.145 (3)−0.028 (2)0.019 (2)0.016 (3)
S1—C81.665 (3)C6—H60.9300
S2—C81.739 (3)C7—H70.9300
S2—C91.814 (3)C9—C101.494 (4)
O1—C41.360 (4)C9—H9A0.9700
O1—C161.427 (4)C9—H9B0.9700
N1—C71.269 (4)C10—C151.356 (6)
N1—N21.371 (3)C10—C111.367 (6)
N2—C81.331 (3)C11—C121.376 (7)
N2—H20.8600C11—H110.9300
C1—C21.376 (4)C12—C131.345 (11)
C1—C61.390 (4)C12—H120.9300
C1—C71.446 (4)C13—C141.352 (13)
C2—C31.376 (4)C13—H130.9300
C2—H2A0.9300C14—C151.423 (8)
C3—C41.375 (4)C14—H140.9300
C3—H30.9300C15—H150.9300
C4—C51.381 (4)C16—H16A0.9600
C5—C61.368 (4)C16—H16B0.9600
C5—H50.9300C16—H16C0.9600
C8—S2—C9101.16 (14)C10—C9—S2108.1 (2)
C4—O1—C16117.8 (3)C10—C9—H9A110.1
C7—N1—N2115.5 (2)S2—C9—H9A110.1
C8—N2—N1120.6 (2)C10—C9—H9B110.1
C8—N2—H2119.7S2—C9—H9B110.1
N1—N2—H2119.7H9A—C9—H9B108.4
C2—C1—C6118.2 (3)C15—C10—C11119.8 (4)
C2—C1—C7120.2 (3)C15—C10—C9119.9 (4)
C6—C1—C7121.6 (3)C11—C10—C9120.2 (4)
C3—C2—C1121.9 (3)C10—C11—C12121.9 (6)
C3—C2—H2A119.0C10—C11—H11119.1
C1—C2—H2A119.0C12—C11—H11119.1
C4—C3—C2119.4 (3)C13—C12—C11117.3 (8)
C4—C3—H3120.3C13—C12—H12121.3
C2—C3—H3120.3C11—C12—H12121.3
O1—C4—C3125.3 (3)C12—C13—C14123.8 (7)
O1—C4—C5115.4 (3)C12—C13—H13118.1
C3—C4—C5119.2 (3)C14—C13—H13118.1
C6—C5—C4121.1 (3)C13—C14—C15117.8 (8)
C6—C5—H5119.4C13—C14—H14121.1
C4—C5—H5119.4C15—C14—H14121.1
C5—C6—C1120.1 (3)C10—C15—C14119.2 (7)
C5—C6—H6119.9C10—C15—H15120.4
C1—C6—H6119.9C14—C15—H15120.4
N1—C7—C1122.2 (3)O1—C16—H16A109.5
N1—C7—H7118.9O1—C16—H16B109.5
C1—C7—H7118.9H16A—C16—H16B109.5
N2—C8—S1121.0 (2)O1—C16—H16C109.5
N2—C8—S2113.5 (2)H16A—C16—H16C109.5
S1—C8—S2125.59 (18)H16B—C16—H16C109.5
Cg is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.862.593.397 (4)158
C16—H16C···Cgii0.962.833.671 (5)147
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.862.593.397 (4)158
C16—H16CCgii0.962.833.671 (5)147

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzyl 3-[(E)-benzyl-idene]dithio-carbazate.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-07

3.  Benzyl 3-[(E)-furfuryl-idene]dithio-carbazate.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10
  3 in total
  3 in total

1.  Crystal structure of benzyl (E)-2-(3,4-di-meth-oxy-benzyl-idene)hydrazine-1-carbodi-thio-ate.

Authors:  Yew-Fung Tan; Mohammed Khaled Bin Break; M Ibrahim M Tahir; Teng-Jin Khoo
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-31

2.  Crystal structure of benzyl N'-[(1E,4E)-1,5-bis-(4-meth-oxy-phen-yl)penta-1,4-dien-3-yl-idene]hydrazine-1-carbodi-thio-ate.

Authors:  Nabeel Arif Tawfeeq; Huey Chong Kwong; Mohamed Ibrahim Mohamed Tahir; Thahira B S A Ravoof
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-10-03

3.  2-[(1E)-({[(Benzyl-sulfan-yl)methane-thio-yl]amino}-imino)-meth-yl]-6-meth-oxy-phenol: crystal structure and Hirshfeld surface analysis.

Authors:  Enis Nadia Md Yusof; Mukesh M Jotani; Edward R T Tiekink; Thahira B S A Ravoof
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-03-18
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.