Literature DB >> 27369081

Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress.

Alicia K Byrd1, Boris L Zybailov2, Leena Maddukuri1, Jun Gao1, John C Marecki1, Mihir Jaiswal3, Matthew R Bell1, Wezley C Griffin1, Megan R Reed1, Shubeena Chib1, Samuel G Mackintosh4, Angus M MacNicol5, Giulia Baldini1, Robert L Eoff4, Kevin D Raney6.   

Abstract

Cells engage numerous signaling pathways in response to oxidative stress that together repair macromolecular damage or direct the cell toward apoptosis. As a result of DNA damage, mitochondrial DNA or nuclear DNA has been shown to enter the cytoplasm where it binds to "DNA sensors," which in turn initiate signaling cascades. Here we report data that support a novel signaling pathway in response to oxidative stress mediated by specific guanine-rich sequences that can fold into G-quadruplex DNA (G4DNA). In response to oxidative stress, we demonstrate that sequences capable of forming G4DNA appear at increasing levels in the cytoplasm and participate in assembly of stress granules. Identified proteins that bind to endogenous G4DNA in the cytoplasm are known to modulate mRNA translation and participate in stress granule formation. Consistent with these findings, stress granule formation is known to regulate mRNA translation during oxidative stress. We propose a signaling pathway whereby cells can rapidly respond to DNA damage caused by oxidative stress. Guanine-rich sequences that are excised from damaged genomic DNA are proposed to enter the cytoplasm where they can regulate translation through stress granule formation. This newly proposed role for G4DNA provides an additional molecular explanation for why such sequences are prevalent in the human genome.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  DNA repair; G-quadruplex; oxidative stress; signaling; stress granule; stress response; telomere

Mesh:

Substances:

Year:  2016        PMID: 27369081      PMCID: PMC5016190          DOI: 10.1074/jbc.M116.718478

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  113 in total

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Journal:  J Immunol       Date:  2003-08-01       Impact factor: 5.422

3.  Regulation of gene expression by the BLM helicase correlates with the presence of G-quadruplex DNA motifs.

Authors:  Giang Huong Nguyen; Weiliang Tang; Ana I Robles; Richard P Beyer; Lucas T Gray; Judith A Welsh; Aaron J Schetter; Kensuke Kumamoto; Xin Wei Wang; Ian D Hickson; Nancy Maizels; Raymond J Monnat; Curtis C Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

4.  Yeast transcription co-activator Sub1 and its human homolog PC4 preferentially bind to G-quadruplex DNA.

Authors:  Jun Gao; Boris L Zybailov; Alicia K Byrd; Wezley C Griffin; Shubeena Chib; Samuel G Mackintosh; Alan J Tackett; Kevin D Raney
Journal:  Chem Commun (Camb)       Date:  2015-04-28       Impact factor: 6.222

5.  Inhibition of mTORC1 by astrin and stress granules prevents apoptosis in cancer cells.

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Review 6.  Unconventional features of C9ORF72 expanded repeat in amyotrophic lateral sclerosis and frontotemporal lobar degeneration.

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Journal:  Neurobiol Aging       Date:  2014-04-19       Impact factor: 4.673

Review 7.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

8.  G-quadruplex structures are stable and detectable in human genomic DNA.

Authors:  Enid Yi Ni Lam; Dario Beraldi; David Tannahill; Shankar Balasubramanian
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Detection of G-quadruplex DNA in mammalian cells.

Authors:  Alexander Henderson; Yuliang Wu; Yu Chuan Huang; Elizabeth A Chavez; Jesse Platt; F Brad Johnson; Robert M Brosh; Dipankar Sen; Peter M Lansdorp
Journal:  Nucleic Acids Res       Date:  2013-10-24       Impact factor: 16.971

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Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

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  25 in total

1.  A biochemical and biophysical model of G-quadruplex DNA recognition by positive coactivator of transcription 4.

Authors:  Wezley C Griffin; Jun Gao; Alicia K Byrd; Shubeena Chib; Kevin D Raney
Journal:  J Biol Chem       Date:  2017-04-17       Impact factor: 5.157

2.  Human DNA Repair Genes Possess Potential G-Quadruplex Sequences in Their Promoters and 5'-Untranslated Regions.

Authors:  Aaron M Fleming; Judy Zhu; Yun Ding; Joshua A Visser; Julia Zhu; Cynthia J Burrows
Journal:  Biochemistry       Date:  2018-01-24       Impact factor: 3.162

Review 3.  Mechanistic and biological considerations of oxidatively damaged DNA for helicase-dependent pathways of nucleic acid metabolism.

Authors:  Jack D Crouch; Robert M Brosh
Journal:  Free Radic Biol Med       Date:  2016-11-22       Impact factor: 7.376

Review 4.  G-Quadruplex Assembly by Ribosomal DNA: Emerging Roles in Disease Pathogenesis and Cancer Biology.

Authors:  Arindam Datta; Kevin J Pollock; Karen A Kormuth; Robert M Brosh
Journal:  Cytogenet Genome Res       Date:  2021-09-01       Impact factor: 1.941

Review 5.  Action and function of helicases on RNA G-quadruplexes.

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Journal:  Methods       Date:  2021-09-10       Impact factor: 4.647

Review 6.  Extracellular Vesicles in Angiogenesis.

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Review 7.  Targeting stress granules: A novel therapeutic strategy for human diseases.

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Review 8.  Oxidative Stress: Role and Response of Short Guanine Tracts at Genomic Locations.

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Journal:  Int J Mol Sci       Date:  2019-08-30       Impact factor: 5.923

9.  Characterization of metapopulation of Ellobium chinense through Pleistocene expansions and four covariate COI guanine-hotspots linked to G-quadruplex conformation.

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Journal:  Sci Rep       Date:  2021-06-10       Impact factor: 4.379

10.  Fundamentals of G-quadruplex biology.

Authors:  F Brad Johnson
Journal:  Annu Rep Med Chem       Date:  2020-07-30       Impact factor: 1.059

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