Literature DB >> 34469893

G-Quadruplex Assembly by Ribosomal DNA: Emerging Roles in Disease Pathogenesis and Cancer Biology.

Arindam Datta1, Kevin J Pollock2, Karen A Kormuth2, Robert M Brosh1.   

Abstract

Unique repetitive elements of the eukaryotic genome can be problematic for cellular DNA replication and transcription and pose a source of genomic instability. Human ribosomal DNA (rDNA) exists as repeating units clustered together on several chromosomes. Understanding the molecular mechanisms whereby rDNA interferes with normal genome homeostasis is the subject of this review. We discuss the instability of rDNA as a driver of senescence and the important roles of helicases to suppress its deleterious effects. The propensity of rDNA that is rich in guanine bases to form G-quadruplexes (G4) is discussed and evaluated in disease pathogenesis. Targeting G4 in the ribosomes and other chromosomal loci may represent a useful synthetic lethal approach to combating cancer. ©2021 This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply. Published by S. Karger AG, Basel.

Entities:  

Keywords:  Aging; Cancer; DNA damage; G-quadruplex; Genomic instability; Helicase; Ribosomal DNA; Transcription

Mesh:

Substances:

Year:  2021        PMID: 34469893      PMCID: PMC8455414          DOI: 10.1159/000516394

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN: 1424-8581            Impact factor:   1.941


  109 in total

1.  Dna2 nuclease deficiency results in large and complex DNA insertions at chromosomal breaks.

Authors:  Yang Yu; Nhung Pham; Bo Xia; Alma Papusha; Guangyu Wang; Zhenxin Yan; Guang Peng; Kaifu Chen; Grzegorz Ira
Journal:  Nature       Date:  2018-12-05       Impact factor: 49.962

2.  Accelerated aging and nucleolar fragmentation in yeast sgs1 mutants.

Authors:  D A Sinclair; K Mills; L Guarente
Journal:  Science       Date:  1997-08-29       Impact factor: 47.728

Review 3.  G-quadruplexes in RNA biology.

Authors:  Stefania Millevoi; Hervé Moine; Stéphan Vagner
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-04-04       Impact factor: 9.957

4.  A new role of the rDNA and nucleolus in the nucleus--rDNA instability maintains genome integrity.

Authors:  Takehiko Kobayashi
Journal:  Bioessays       Date:  2008-03       Impact factor: 4.345

5.  A comparison of DNA and RNA quadruplex structures and stabilities.

Authors:  Astrid Joachimi; Armin Benz; Jörg S Hartig
Journal:  Bioorg Med Chem       Date:  2009-08-22       Impact factor: 3.641

6.  High affinity interactions of nucleolin with G-G-paired rDNA.

Authors:  L A Hanakahi; H Sun; N Maizels
Journal:  J Biol Chem       Date:  1999-05-28       Impact factor: 5.157

7.  Targeting RNA polymerase I with an oral small molecule CX-5461 inhibits ribosomal RNA synthesis and solid tumor growth.

Authors:  Denis Drygin; Amy Lin; Josh Bliesath; Caroline B Ho; Sean E O'Brien; Chris Proffitt; Mayuko Omori; Mustapha Haddach; Michael K Schwaebe; Adam Siddiqui-Jain; Nicole Streiner; Jaclyn E Quin; Elaine Sanij; Megan J Bywater; Ross D Hannan; David Ryckman; Kenna Anderes; William G Rice
Journal:  Cancer Res       Date:  2010-12-15       Impact factor: 12.701

8.  RNA polymerase II elongation complexes containing the Cockayne syndrome group B protein interact with a molecular complex containing the transcription factor IIH components xeroderma pigmentosum B and p62.

Authors:  D Tantin
Journal:  J Biol Chem       Date:  1998-10-23       Impact factor: 5.157

Review 9.  5'-UTR RNA G-quadruplexes: translation regulation and targeting.

Authors:  Anthony Bugaut; Shankar Balasubramanian
Journal:  Nucleic Acids Res       Date:  2012-02-20       Impact factor: 16.971

10.  Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae.

Authors:  Steve G Hershman; Qijun Chen; Julia Y Lee; Marina L Kozak; Peng Yue; Li-San Wang; F Brad Johnson
Journal:  Nucleic Acids Res       Date:  2007-11-13       Impact factor: 16.971

View more
  3 in total

1.  Computational and Experimental Characterization of rDNA and rRNA G-Quadruplexes.

Authors:  Adam T Green; Amanda J Pickard; Rongzhong Li; Alexander D MacKerell; Ulrich Bierbach; Samuel S Cho
Journal:  J Phys Chem B       Date:  2022-01-13       Impact factor: 2.991

2.  The long and short of rDNA and yeast replicative aging.

Authors:  Jeffrey S Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-03       Impact factor: 12.779

Review 3.  Non-canonical DNA structures: Diversity and disease association.

Authors:  Aparna Bansal; Shikha Kaushik; Shrikant Kukreti
Journal:  Front Genet       Date:  2022-09-05       Impact factor: 4.772

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.