Literature DB >> 25813861

Yeast transcription co-activator Sub1 and its human homolog PC4 preferentially bind to G-quadruplex DNA.

Jun Gao1, Boris L Zybailov, Alicia K Byrd, Wezley C Griffin, Shubeena Chib, Samuel G Mackintosh, Alan J Tackett, Kevin D Raney.   

Abstract

Using a G-quadruplex bait, we identified the transcription co-activator Sub1 as a G-quadruplex binding protein by quantitative LC-MS/MS and demonstrated in vivo G-quadruplex binding by ChIP. In vitro, Sub1, and its human homolog PC4, bind preferentially to G-quadruplexes. This provides a possible mechanism by which G-quadruplexes can influence gene transcription.

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Year:  2015        PMID： 25813861      PMCID： PMC4465349          DOI： 10.1039/c5cc00742a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  31 in total

1.  Crystal structure of parallel quadruplexes from human telomeric DNA.

Authors:  Gary N Parkinson; Michael P H Lee; Stephen Neidle
Journal:  Nature       Date:  2002-05-26       Impact factor: 49.962

2.  The DEXH protein product of the DHX36 gene is the major source of tetramolecular quadruplex G4-DNA resolving activity in HeLa cell lysates.

Authors:  James P Vaughn; Steven D Creacy; Eric D Routh; Christi Joyner-Butt; G Scott Jenkins; Sandra Pauli; Yoshikuni Nagamine; Steven A Akman
Journal:  J Biol Chem       Date:  2005-09-07       Impact factor: 5.157

3.  Effect of monovalent cation-induced telomeric DNA structure on the binding of Oxytricha telomeric protein.

Authors:  M K Raghuraman; T R Cech
Journal:  Nucleic Acids Res       Date:  1990-08-11       Impact factor: 16.971

4.  G4 DNA binding by LR1 and its subunits, nucleolin and hnRNP D, A role for G-G pairing in immunoglobulin switch recombination.

Authors:  L A Dempsey; H Sun; L A Hanakahi; N Maizels
Journal:  J Biol Chem       Date:  1999-01-08       Impact factor: 5.157

5.  A novel yeast gene product, G4p1, with a specific affinity for quadruplex nucleic acids.

Authors:  J D Frantz; W Gilbert
Journal:  J Biol Chem       Date:  1995-09-01       Impact factor: 5.157

6.  High affinity interactions of nucleolin with G-G-paired rDNA.

Authors:  L A Hanakahi; H Sun; N Maizels
Journal:  J Biol Chem       Date:  1999-05-28       Impact factor: 5.157

7.  Transcription-positive cofactor 4 forms complexes with HSSB (RPA) on single-stranded DNA and influences HSSB-dependent enzymatic synthesis of simian virus 40 DNA.

Authors:  Z Q Pan; H Ge; A A Amin; J Hurwitz
Journal:  J Biol Chem       Date:  1996-09-06       Impact factor: 5.157

8.  A yeast transcriptional stimulatory protein similar to human PC4.

Authors:  N L Henry; D A Bushnell; R D Kornberg
Journal:  J Biol Chem       Date:  1996-09-06       Impact factor: 5.157

9.  Yeast SUB1 is a suppressor of TFIIB mutations and has homology to the human co-activator PC4.

Authors:  R Knaus; R Pollock; L Guarente
Journal:  EMBO J       Date:  1996-04-15       Impact factor: 11.598

10.  Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide.

Authors:  Pankaj Kumar; Vinod Kumar Yadav; Aradhita Baral; Parveen Kumar; Dhurjhoti Saha; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2011-07-04       Impact factor: 16.971
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  21 in total

1.  A biochemical and biophysical model of G-quadruplex DNA recognition by positive coactivator of transcription 4.

Authors:  Wezley C Griffin; Jun Gao; Alicia K Byrd; Shubeena Chib; Kevin D Raney
Journal:  J Biol Chem       Date:  2017-04-17       Impact factor: 5.157

2.  Maize plant nitrogen uptake dynamics at limited irrigation water and nitrogen.

Authors:  Hafiz Mohkum Hammad; Wajid Farhad; Farhat Abbas; Shah Fahad; Shafqat Saeed; Wajid Nasim; Hafiz Faiq Bakhat
Journal:  Environ Sci Pollut Res Int       Date:  2016-11-08       Impact factor: 4.223

3.  DEAD-box RNA helicases Dbp2, Ded1 and Mss116 bind to G-quadruplex nucleic acids and destabilize G-quadruplex RNA.

Authors:  Jun Gao; Alicia K Byrd; Boris L Zybailov; John C Marecki; Michael J Guderyon; Andrea D Edwards; Shubeena Chib; Kirk L West; Zachary J Waldrip; Samuel G Mackintosh; Zhaofeng Gao; Andrea A Putnam; Eckhard Jankowsky; Kevin D Raney
Journal:  Chem Commun (Camb)       Date:  2019-04-11       Impact factor: 6.222

Review 4.  Sub1/PC4, a multifaceted factor: from transcription to genome stability.

Authors:  Miguel Garavís; Olga Calvo
Journal:  Curr Genet       Date:  2017-05-31       Impact factor: 3.886

Review 5.  Structure and function of Pif1 helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Biochem Soc Trans       Date:  2017-09-12       Impact factor: 5.407

6.  Identification of SLIRP as a G Quadruplex-Binding Protein.

Authors:  Preston Williams; Lin Li; Xiaoli Dong; Yinsheng Wang
Journal:  J Am Chem Soc       Date:  2017-09-05       Impact factor: 15.419

7.  Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress.

Authors:  Alicia K Byrd; Boris L Zybailov; Leena Maddukuri; Jun Gao; John C Marecki; Mihir Jaiswal; Matthew R Bell; Wezley C Griffin; Megan R Reed; Shubeena Chib; Samuel G Mackintosh; Angus M MacNicol; Giulia Baldini; Robert L Eoff; Kevin D Raney
Journal:  J Biol Chem       Date:  2016-07-01       Impact factor: 5.157

8.  A Quantitative Proteomic Approach for the Identification of DNA Guanine Quadruplex-Binding Proteins.

Authors:  Zi Gao; Preston Williams; Lin Li; Yinsheng Wang
Journal:  J Proteome Res       Date:  2021-09-27       Impact factor: 4.466

9.  Small-molecule G-quadruplex stabilizers reveal a novel pathway of autophagy regulation in neurons.

Authors:  Jose F Moruno-Manchon; Pauline Lejault; Yaoxuan Wang; Brenna McCauley; Pedram Honarpisheh; Diego A Morales Scheihing; Shivani Singh; Weiwei Dang; Nayun Kim; Akihiko Urayama; Liang Zhu; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Elife       Date:  2020-02-11       Impact factor: 8.713

Review 10.  G-quadruplexes and helicases.

Authors:  Oscar Mendoza; Anne Bourdoncle; Jean-Baptiste Boulé; Robert M Brosh; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2016-02-15       Impact factor: 16.971
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