Literature DB >> 27357569

Droplet organelles?

Edward M Courchaine1, Alice Lu1, Karla M Neugebauer2.   

Abstract

Cells contain numerous, molecularly distinct cellular compartments that are not enclosed by lipid bilayers. These compartments are implicated in a wide range of cellular activities, and they have been variously described as bodies, granules, or organelles. Recent evidence suggests that a liquid-liquid phase separation (LLPS) process may drive their formation, possibly justifying the unifying term "droplet organelle". A veritable deluge of recent publications points to the importance of low-complexity proteins and RNA in determining the physical properties of phase-separated structures. Many of the proteins linked to such structures are implicated in human diseases, such as amyotrophic lateral sclerosis (ALS). We provide an overview of the organizational principles that characterize putative "droplet organelles" in healthy and diseased cells, connecting protein biochemistry with cell physiology.
© 2016 The Authors.

Entities:  

Keywords:  Liquid‐liquid phase separation; RNP granules; low‐complexity domain; nuclear bodies

Mesh:

Substances:

Year:  2016        PMID: 27357569      PMCID: PMC4969579          DOI: 10.15252/embj.201593517

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  84 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  Coordination of translational control and protein homeostasis during severe heat stress.

Authors:  Valeria Cherkasov; Sarah Hofmann; Silke Druffel-Augustin; Axel Mogk; Jens Tyedmers; Georg Stoecklin; Bernd Bukau
Journal:  Curr Biol       Date:  2013-11-27       Impact factor: 10.834

Review 3.  Cajal bodies: where form meets function.

Authors:  Martin Machyna; Patricia Heyn; Karla M Neugebauer
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-10-05       Impact factor: 9.957

Review 4.  Biogenesis and function of nuclear bodies.

Authors:  Yuntao S Mao; Bin Zhang; David L Spector
Journal:  Trends Genet       Date:  2011-06-15       Impact factor: 11.639

5.  Regulated Formation of an Amyloid-like Translational Repressor Governs Gametogenesis.

Authors:  Luke E Berchowitz; Greg Kabachinski; Margaret R Walker; Thomas M Carlile; Wendy V Gilbert; Thomas U Schwartz; Angelika Amon
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

6.  Eukaryotic stress granules are cleared by autophagy and Cdc48/VCP function.

Authors:  J Ross Buchan; Regina-Maria Kolaitis; J Paul Taylor; Roy Parker
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

7.  Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.

Authors:  Anh Tuân Phan; Vitaly Kuryavyi; Jennifer C Darnell; Alexander Serganov; Ananya Majumdar; Serge Ilin; Tanya Raslin; Anna Polonskaia; Cynthia Chen; David Clain; Robert B Darnell; Dinshaw J Patel
Journal:  Nat Struct Mol Biol       Date:  2011-06-05       Impact factor: 15.369

8.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

9.  Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.

Authors:  Sven Hennig; Geraldine Kong; Taro Mannen; Agata Sadowska; Simon Kobelke; Amanda Blythe; Gavin J Knott; K Swaminathan Iyer; Diwei Ho; Estella A Newcombe; Kana Hosoki; Naoki Goshima; Tetsuya Kawaguchi; Danny Hatters; Laura Trinkle-Mulcahy; Tetsuro Hirose; Charles S Bond; Archa H Fox
Journal:  J Cell Biol       Date:  2015-08-17       Impact factor: 10.539

10.  ALS/FTD Mutation-Induced Phase Transition of FUS Liquid Droplets and Reversible Hydrogels into Irreversible Hydrogels Impairs RNP Granule Function.

Authors:  Tetsuro Murakami; Seema Qamar; Julie Qiaojin Lin; Gabriele S Kaminski Schierle; Eric Rees; Akinori Miyashita; Ana R Costa; Roger B Dodd; Fiona T S Chan; Claire H Michel; Deborah Kronenberg-Versteeg; Yi Li; Seung-Pil Yang; Yosuke Wakutani; William Meadows; Rodylyn Rose Ferry; Liang Dong; Gian Gaetano Tartaglia; Giorgio Favrin; Wen-Lang Lin; Dennis W Dickson; Mei Zhen; David Ron; Gerold Schmitt-Ulms; Paul E Fraser; Neil A Shneider; Christine Holt; Michele Vendruscolo; Clemens F Kaminski; Peter St George-Hyslop
Journal:  Neuron       Date:  2015-10-29       Impact factor: 17.173

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  98 in total

1.  Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa.

Authors:  Lisa R Racki; Elitza I Tocheva; Michael G Dieterle; Meaghan C Sullivan; Grant J Jensen; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  U2AF65 assemblies drive sequence-specific splice site recognition.

Authors:  Manel Tari; Valérie Manceau; Jean de Matha Salone; Asaki Kobayashi; David Pastré; Alexandre Maucuer
Journal:  EMBO Rep       Date:  2019-07-04       Impact factor: 8.807

3.  The Role of Cohesiveness in the Permeability of the Spatial Assemblies of FG Nucleoporins.

Authors:  Chad Gu; Andrei Vovk; Tiantian Zheng; Rob D Coalson; Anton Zilman
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

Review 4.  Specific genomic cues regulate Cajal body assembly.

Authors:  Iain A Sawyer; Gordon L Hager; Miroslav Dundr
Journal:  RNA Biol       Date:  2016-10-07       Impact factor: 4.652

Review 5.  Chromatin loops and causality loops: the influence of RNA upon spatial nuclear architecture.

Authors:  Iain A Sawyer; Miroslav Dundr
Journal:  Chromosoma       Date:  2017-06-07       Impact factor: 4.316

6.  Independent active and thermodynamic processes govern the nucleolus assembly in vivo.

Authors:  Hanieh Falahati; Eric Wieschaus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

Review 7.  Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body.

Authors:  Robert J Duronio; William F Marzluff
Journal:  RNA Biol       Date:  2017-01-06       Impact factor: 4.652

8.  Direct observation of structure and dynamics during phase separation of an elastomeric protein.

Authors:  Sean E Reichheld; Lisa D Muiznieks; Fred W Keeley; Simon Sharpe
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

Review 9.  The Cajal body and the nucleolus: "In a relationship" or "It's complicated"?

Authors:  Laura Trinkle-Mulcahy; Judith E Sleeman
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

10.  Measles Virus Forms Inclusion Bodies with Properties of Liquid Organelles.

Authors:  Yuqin Zhou; Justin M Su; Charles E Samuel; Dzwokai Ma
Journal:  J Virol       Date:  2019-10-15       Impact factor: 5.103

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