Literature DB >> 21680045

Biogenesis and function of nuclear bodies.

Yuntao S Mao1, Bin Zhang, David L Spector.   

Abstract

Nuclear bodies including nucleoli, Cajal bodies, nuclear speckles, Polycomb bodies, and paraspeckles are membraneless subnuclear organelles. They are present at steady-state and dynamically respond to basic physiological processes as well as to various forms of stress, altered metabolic conditions and alterations in cellular signaling. The formation of a specific nuclear body has been suggested to follow a stochastic or ordered assembly model. In addition, a seeding mechanism has been proposed to assemble, maintain, and regulate particular nuclear bodies. In coordination with noncoding RNAs, chromatin modifiers and other machineries, various nuclear bodies have been shown to sequester and modify proteins, process RNAs and assemble ribonucleoprotein complexes, as well as epigenetically regulate gene expression. Understanding the functional relationships between the 3D organization of the genome and nuclear bodies is essential to fully uncover the regulation of gene expression and its implications for human disease.
Copyright © 2011 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21680045      PMCID: PMC3144265          DOI: 10.1016/j.tig.2011.05.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  125 in total

Review 1.  Regulation of the actin cytoskeleton by phosphatidylinositol 4-phosphate 5 kinases.

Authors:  Yuntao S Mao; Helen L Yin
Journal:  Pflugers Arch       Date:  2007-05-23       Impact factor: 3.657

Review 2.  Genome-wide transcription and the implications for genomic organization.

Authors:  Philipp Kapranov; Aarron T Willingham; Thomas R Gingeras
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

3.  The CTCF insulator protein is posttranslationally modified by SUMO.

Authors:  Melissa J MacPherson; Linda G Beatty; Wenjing Zhou; Minjie Du; Paul D Sadowski
Journal:  Mol Cell Biol       Date:  2008-11-24       Impact factor: 4.272

4.  De novo formation of a subnuclear body.

Authors:  Trish E Kaiser; Robert V Intine; Miroslav Dundr
Journal:  Science       Date:  2008-10-23       Impact factor: 47.728

5.  Structural and functional roles of Daxx SIM phosphorylation in SUMO paralog-selective binding and apoptosis modulation.

Authors:  Che-Chang Chang; Mandar T Naik; Yen-Sung Huang; Jen-Chong Jeng; Pei-Hsin Liao; Hong-Yi Kuo; Chun-Chen Ho; Yung-Lin Hsieh; Chiou-Hong Lin; Nai-Jia Huang; Nandita M Naik; Camy C-H Kung; Shu-Yu Lin; Ruey-Hwa Chen; Kun-Sang Chang; Tai-Huang Huang; Hsiu-Ming Shih
Journal:  Mol Cell       Date:  2011-04-08       Impact factor: 17.970

6.  Lin28: A microRNA regulator with a macro role.

Authors:  Srinivas R Viswanathan; George Q Daley
Journal:  Cell       Date:  2010-02-19       Impact factor: 41.582

7.  RNAi components are required for nuclear clustering of Polycomb group response elements.

Authors:  Charlotte Grimaud; Frédéric Bantignies; Manika Pal-Bhadra; Pallavi Ghana; Utpal Bhadra; Giacomo Cavalli
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

8.  C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomes.

Authors:  Heather A Hundley; Ammie A Krauchuk; Brenda L Bass
Journal:  RNA       Date:  2008-08-21       Impact factor: 4.942

9.  A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Authors:  John N Hutchinson; Alexander W Ensminger; Christine M Clemson; Christopher R Lynch; Jeanne B Lawrence; Andrew Chess
Journal:  BMC Genomics       Date:  2007-02-01       Impact factor: 3.969

10.  The dynamic organization of the perinucleolar compartment in the cell nucleus.

Authors:  S Huang; T J Deerinck; M H Ellisman; D L Spector
Journal:  J Cell Biol       Date:  1997-06-02       Impact factor: 10.539

View more
  270 in total

Review 1.  Nuclear architecture and dynamics: territories, nuclear bodies, and nucleocytoplasmic trafficking.

Authors:  Alice Y Cheung; Anireddy S N Reddy
Journal:  Plant Physiol       Date:  2012-01       Impact factor: 8.340

2.  A lincRNA switch for embryonic stem cell fate.

Authors:  Liuqing Yang; Chunru Lin; Michael G Rosenfeld
Journal:  Cell Res       Date:  2011-10-25       Impact factor: 25.617

Review 3.  Dicing bodies.

Authors:  Qi Liu; Leilei Shi; Yuda Fang
Journal:  Plant Physiol       Date:  2011-10-24       Impact factor: 8.340

4.  Chromatin remodeling complexes in the assembly of long noncoding RNA-dependent nuclear bodies.

Authors:  Tetsuya Kawaguchi; Tetsuro Hirose
Journal:  Nucleus       Date:  2015-12-28       Impact factor: 4.197

5.  Phosphorylation-mediated RNA/peptide complex coacervation as a model for intracellular liquid organelles.

Authors:  William M Aumiller; Christine D Keating
Journal:  Nat Chem       Date:  2015-12-21       Impact factor: 24.427

Review 6.  Regulation of mammary epithelial cell homeostasis by lncRNAs.

Authors:  Amy N Shore; Jeffrey M Rosen
Journal:  Int J Biochem Cell Biol       Date:  2014-03-26       Impact factor: 5.085

7.  The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites.

Authors:  Jason A West; Christopher P Davis; Hongjae Sunwoo; Matthew D Simon; Ruslan I Sadreyev; Peggy I Wang; Michael Y Tolstorukov; Robert E Kingston
Journal:  Mol Cell       Date:  2014-08-21       Impact factor: 17.970

Review 8.  Long non-coding RNAs: modulators of nuclear structure and function.

Authors:  Jan H Bergmann; David L Spector
Journal:  Curr Opin Cell Biol       Date:  2013-09-20       Impact factor: 8.382

9.  The host protein CLUH participates in the subnuclear transport of influenza virus ribonucleoprotein complexes.

Authors:  Tomomi Ando; Seiya Yamayoshi; Yuriko Tomita; Shinji Watanabe; Tokiko Watanabe; Yoshihiro Kawaoka
Journal:  Nat Microbiol       Date:  2016-05-16       Impact factor: 17.745

10.  Influenza virus mRNA trafficking through host nuclear speckles.

Authors:  Amir Mor; Alexander White; Ke Zhang; Matthew Thompson; Matthew Esparza; Raquel Muñoz-Moreno; Kazunori Koide; Kristen W Lynch; Adolfo García-Sastre; Beatriz M A Fontoura
Journal:  Nat Microbiol       Date:  2016-05-27       Impact factor: 17.745

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.