Literature DB >> 27339990

Synthetic evolutionary origin of a proofreading reverse transcriptase.

Jared W Ellefson1, Jimmy Gollihar2, Raghav Shroff2, Haridha Shivram2, Vishwanath R Iyer2, Andrew D Ellington1.   

Abstract

Most reverse transcriptase (RT) enzymes belong to a single protein family of ancient evolutionary origin. These polymerases are inherently error prone, owing to their lack of a proofreading (3'- 5' exonuclease) domain. To determine if the lack of proofreading is a historical coincidence or a functional limitation of reverse transcription, we attempted to evolve a high-fidelity, thermostable DNA polymerase to use RNA templates efficiently. The evolutionarily distinct reverse transcription xenopolymerase (RTX) actively proofreads on DNA and RNA templates, which greatly improves RT fidelity. In addition, RTX enables applications such as single-enzyme reverse transcription-polymerase chain reaction and direct RNA sequencing without complementary DNA isolation. The creation of RTX confirms that proofreading is compatible with reverse transcription.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27339990     DOI: 10.1126/science.aaf5409

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  40 in total

1.  DNA polymerase activity on synthetic N3'→P5' phosphoramidate DNA templates.

Authors:  Victor S Lelyveld; Derek K O'Flaherty; Lijun Zhou; Enver Cagri Izgu; Jack W Szostak
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

Review 2.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

3.  How a B family DNA polymerase has been evolved to copy RNA.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-17       Impact factor: 11.205

Review 4.  Compartmentalized partnered replication for the directed evolution of genetic parts and circuits.

Authors:  Zhanar Abil; Jared W Ellefson; Jimmy D Gollihar; Ella Watkins; Andrew D Ellington
Journal:  Nat Protoc       Date:  2017-11-09       Impact factor: 13.491

Review 5.  An overview of 25 years of research on Thermococcus kodakarensis, a genetically versatile model organism for archaeal research.

Authors:  Naeem Rashid; Mehwish Aslam
Journal:  Folia Microbiol (Praha)       Date:  2019-07-08       Impact factor: 2.099

6.  Easi-CRISPR for creating knock-in and conditional knockout mouse models using long ssDNA donors.

Authors:  Hiromi Miura; Rolen M Quadros; Channabasavaiah B Gurumurthy; Masato Ohtsuka
Journal:  Nat Protoc       Date:  2017-12-21       Impact factor: 13.491

7.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

8.  Discovery and evolution of RNA and XNA reverse transcriptase function and fidelity.

Authors:  Gillian Houlihan; Sebastian Arangundy-Franklin; Benjamin T Porebski; Nithya Subramanian; Alexander I Taylor; Philipp Holliger
Journal:  Nat Chem       Date:  2020-07-20       Impact factor: 24.427

9.  High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.

Authors:  Alexandra M de Paz; Thaddeus R Cybulski; Adam H Marblestone; Bradley M Zamft; George M Church; Edward S Boyden; Konrad P Kording; Keith E J Tyo
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

Review 10.  Synthetic evolution.

Authors:  Anna J Simon; Simon d'Oelsnitz; Andrew D Ellington
Journal:  Nat Biotechnol       Date:  2019-06-17       Impact factor: 54.908

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