Literature DB >> 31286382

An overview of 25 years of research on Thermococcus kodakarensis, a genetically versatile model organism for archaeal research.

Naeem Rashid1, Mehwish Aslam2.   

Abstract

Almost 25 years have passed since the discovery of a planktonic, heterotrophic, hyperthermophilic archaeon named Thermococcus kodakarensis KOD1, previously known as Pyrococcus sp. KOD1, by Imanaka and coworkers. T. kodakarensis is one of the most studied archaeon in terms of metabolic pathways, available genomic resources, established genetic engineering techniques, reporter constructs, in vitro transcription/translation machinery, and gene expression/gene knockout systems. In addition to all these, ease of growth using various carbon sources makes it a facile archaeal model organism. Here, in this review, an attempt is made to reflect what we have learnt from this hyperthermophilic archaeon.

Entities:  

Year:  2019        PMID: 31286382     DOI: 10.1007/s12223-019-00730-2

Source DB:  PubMed          Journal:  Folia Microbiol (Praha)        ISSN: 0015-5632            Impact factor:   2.099


  145 in total

1.  Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis.

Authors:  Jane E Ladner; Miao Pan; Jerard Hurwitz; Zvi Kelman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-26       Impact factor: 11.205

2.  Conformational contagion in a protein: structural properties of a chameleon sequence.

Authors:  Kazufumi Takano; Yoshiaki Katagiri; Atsushi Mukaiyama; Hyongi Chon; Hiroyoshi Matsumura; Yuichi Koga; Shigenori Kanaya
Journal:  Proteins       Date:  2007-08-15

3.  Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  Takaaki Sato; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

4.  Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1.

Authors:  Sunghark Kwon; Yuichi Nishitani; Satoshi Watanabe; Yoshinori Hirao; Tadayuki Imanaka; Tamotsu Kanai; Haruyuki Atomi; Kunio Miki
Journal:  Proteins       Date:  2016-06-08

5.  Structural basis for branching-enzyme activity of glycoside hydrolase family 57: structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Authors:  Camila R Santos; Celisa C C Tonoli; Daniel M Trindade; Christian Betzel; Hiroki Takata; Takashi Kuriki; Tamotsu Kanai; Tadayuki Imanaka; Raghuvir K Arni; Mário T Murakami
Journal:  Proteins       Date:  2011-02

6.  Characterization of DNA polymerase from Pyrococcus sp. strain KOD1 and its application to PCR.

Authors:  M Takagi; M Nishioka; H Kakihara; M Kitabayashi; H Inoue; B Kawakami; M Oka; T Imanaka
Journal:  Appl Environ Microbiol       Date:  1997-11       Impact factor: 4.792

7.  Archaeal intrinsic transcription termination in vivo.

Authors:  Thomas J Santangelo; L'ubomíra Cubonová; Katherine M Skinner; John N Reeve
Journal:  J Bacteriol       Date:  2009-09-11       Impact factor: 3.490

8.  Phytoene production utilizing the isoprenoid biosynthesis capacity of Thermococcus kodakarensis.

Authors:  Tsubasa Fuke; Takaaki Sato; Savyasachee Jha; Myra L Tansengco; Haruyuki Atomi
Journal:  Extremophiles       Date:  2018-01-16       Impact factor: 2.395

9.  Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly.

Authors:  Toshihiko Akiba; Noriyuki Ishii; Naeem Rashid; Masaaki Morikawa; Tadayuki Imanaka; Kazuaki Harata
Journal:  Nucleic Acids Res       Date:  2005-06-13       Impact factor: 16.971

10.  The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.

Authors:  Sung-Hoon Jun; Akira Hirata; Tamotsu Kanai; Thomas J Santangelo; Tadayuki Imanaka; Katsuhiko S Murakami
Journal:  Nat Commun       Date:  2014-10-14       Impact factor: 14.919

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