Literature DB >> 31209374

Synthetic evolution.

Anna J Simon1, Simon d'Oelsnitz1,2, Andrew D Ellington3,4.   

Abstract

The combination of modern biotechnologies such as DNA synthesis, λ red recombineering, CRISPR-based editing and next-generation high-throughput sequencing increasingly enables precise manipulation of genes and genomes. Beyond rational design, these technologies also enable the targeted, and potentially continuous, introduction of multiple mutations. While this might seem to be merely a return to natural selection, the ability to target evolution greatly reduces fitness burdens and focuses mutation and selection on those genes and traits that best contribute to a desired phenotype, ultimately throwing evolution into fast forward.

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Year:  2019        PMID: 31209374     DOI: 10.1038/s41587-019-0157-4

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  133 in total

Review 1.  High-throughput metabolic engineering: advances in small-molecule screening and selection.

Authors:  Jeffrey A Dietrich; Adrienne E McKee; Jay D Keasling
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 2.  Genome editing. The new frontier of genome engineering with CRISPR-Cas9.

Authors:  Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2014-11-28       Impact factor: 47.728

Review 3.  Advanced Selection Methodologies for DNAzymes in Sensing and Healthcare Applications.

Authors:  Sandeep Kumar; Shikha Jain; Neeraj Dilbaghi; Amrik Singh Ahluwalia; Ashraf Aly Hassan; Ki-Hyun Kim
Journal:  Trends Biochem Sci       Date:  2018-12-14       Impact factor: 13.807

Review 4.  Recent developments in cell-SELEX technology for aptamer selection.

Authors:  Harleen Kaur
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-07-27       Impact factor: 3.770

5.  Combinatorial cassette mutagenesis as a probe of the informational content of protein sequences.

Authors:  J F Reidhaar-Olson; R T Sauer
Journal:  Science       Date:  1988-07-01       Impact factor: 47.728

Review 6.  Combinatorial chemistry in drug discovery.

Authors:  Ruiwu Liu; Xiaocen Li; Kit S Lam
Journal:  Curr Opin Chem Biol       Date:  2017-05-08       Impact factor: 8.822

7.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

8.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

Review 9.  RNA aptamer evolution: two decades of SELEction.

Authors:  Guillermo Aquino-Jarquin; Julia D Toscano-Garibay
Journal:  Int J Mol Sci       Date:  2011-12-08       Impact factor: 5.923

10.  In vitro evolution of distinct self-cleaving ribozymes in diverse environments.

Authors:  Milena Popović; Palmer S Fliss; Mark A Ditzler
Journal:  Nucleic Acids Res       Date:  2015-06-29       Impact factor: 16.971

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  14 in total

Review 1.  Recent advances in genetic engineering tools based on synthetic biology.

Authors:  Jun Ren; Jingyu Lee; Dokyun Na
Journal:  J Microbiol       Date:  2020-01-02       Impact factor: 3.422

2.  Reporter system architecture affects measurements of noncanonical amino acid incorporation efficiency and fidelity.

Authors:  K A Potts; J T Stieglitz; M Lei; J A Van Deventer
Journal:  Mol Syst Des Eng       Date:  2020-01-23

Review 3.  Systems for in vivo hypermutation: a quest for scale and depth in directed evolution.

Authors:  Gordon Rix; Chang C Liu
Journal:  Curr Opin Chem Biol       Date:  2021-03-27       Impact factor: 8.972

Review 4.  Full-Spectrum Targeted Mutagenesis in Plant and Animal Cells.

Authors:  Brian Iaffaldano; Jakob Reiser
Journal:  Int J Mol Sci       Date:  2021-01-16       Impact factor: 5.923

5.  Engineered dual selection for directed evolution of SpCas9 PAM specificity.

Authors:  Gregory W Goldberg; Jeffrey M Spencer; David O Giganti; Brendan R Camellato; Neta Agmon; David M Ichikawa; Jef D Boeke; Marcus B Noyes
Journal:  Nat Commun       Date:  2021-01-13       Impact factor: 14.919

6.  Should we discount the laboratory origin of COVID-19?

Authors:  Rossana Segreto; Yuri Deigin; Kevin McCairn; Alejandro Sousa; Dan Sirotkin; Karl Sirotkin; Jonathan J Couey; Adrian Jones; Daoyu Zhang
Journal:  Environ Chem Lett       Date:  2021-03-25       Impact factor: 13.615

7.  In vivo diversification of target genomic sites using processive base deaminase fusions blocked by dCas9.

Authors:  Beatriz Álvarez; Mario Mencía; Víctor de Lorenzo; Luis Ángel Fernández
Journal:  Nat Commun       Date:  2020-12-22       Impact factor: 14.919

Review 8.  Novel Engineered Programmable Systems for ADAR-Mediated RNA Editing.

Authors:  Guillermo Aquino-Jarquin
Journal:  Mol Ther Nucleic Acids       Date:  2020-01-15       Impact factor: 8.886

Review 9.  Targeted mutagenesis of multiple chromosomal regions in microbes.

Authors:  Bálint Csörgő; Akos Nyerges; Csaba Pál
Journal:  Curr Opin Microbiol       Date:  2020-06-26       Impact factor: 7.584

10.  Functional Constitutional Dynamic Networks Revealing Evolutionary Reproduction/Variation/Selection Principles.

Authors:  Liang Yue; Shan Wang; Itamar Willner
Journal:  J Am Chem Soc       Date:  2020-08-11       Impact factor: 15.419

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