Literature DB >> 27335450

Advancing Crop Transformation in the Era of Genome Editing.

Fredy Altpeter1, Nathan M Springer2, Laura E Bartley3, Ann E Blechl4, Thomas P Brutnell5, Vitaly Citovsky6, Liza J Conrad7, Stanton B Gelvin8, David P Jackson9, Albert P Kausch10, Peggy G Lemaux11, June I Medford12, Martha L Orozco-Cárdenas13, David M Tricoli14, Joyce Van Eck15, Daniel F Voytas16, Virginia Walbot17, Kan Wang18, Zhanyuan J Zhang19, C Neal Stewart20.   

Abstract

Plant transformation has enabled fundamental insights into plant biology and revolutionized commercial agriculture. Unfortunately, for most crops, transformation and regeneration remain arduous even after more than 30 years of technological advances. Genome editing provides novel opportunities to enhance crop productivity but relies on genetic transformation and plant regeneration, which are bottlenecks in the process. Here, we review the state of plant transformation and point to innovations needed to enable genome editing in crops. Plant tissue culture methods need optimization and simplification for efficiency and minimization of time in culture. Currently, specialized facilities exist for crop transformation. Single-cell and robotic techniques should be developed for high-throughput genomic screens. Plant genes involved in developmental reprogramming, wound response, and/or homologous recombination should be used to boost the recovery of transformed plants. Engineering universal Agrobacterium tumefaciens strains and recruiting other microbes, such as Ensifer or Rhizobium, could facilitate delivery of DNA and proteins into plant cells. Synthetic biology should be employed for de novo design of transformation systems. Genome editing is a potential game-changer in crop genetics when plant transformation systems are optimized.
© 2016 American Society of Plant Biologists. All rights reserved.

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Year:  2016        PMID: 27335450      PMCID: PMC4981132          DOI: 10.1105/tpc.16.00196

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  81 in total

1.  Approaching the Lower Limits of Transgene Variability.

Authors:  L. Mlynarova; LCP. Keizer; W. J. Stiekema; J. P. Nap
Journal:  Plant Cell       Date:  1996-09       Impact factor: 11.277

2.  Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cells.

Authors:  T Lotan; M Ohto; K M Yee; M A West; R Lo; R W Kwong; K Yamagishi; R L Fischer; R B Goldberg; J J Harada
Journal:  Cell       Date:  1998-06-26       Impact factor: 41.582

3.  Differences in susceptibility of Arabidopsis ecotypes to crown gall disease may result from a deficiency in T-DNA integration.

Authors:  J Nam; A G Matthysse; S B Gelvin
Journal:  Plant Cell       Date:  1997-03       Impact factor: 11.277

Review 4.  Somatic embryogenesis - Stress-induced remodeling of plant cell fate.

Authors:  Attila Fehér
Journal:  Biochim Biophys Acta       Date:  2014-07-17

5.  DNA replicons for plant genome engineering.

Authors:  Nicholas J Baltes; Javier Gil-Humanes; Tomas Cermak; Paul A Atkins; Daniel F Voytas
Journal:  Plant Cell       Date:  2014-01-17       Impact factor: 11.277

6.  A binary-BAC system for plant transformation with high-molecular-weight DNA.

Authors:  C M Hamilton
Journal:  Gene       Date:  1997-10-24       Impact factor: 3.688

7.  The CKH2/PKL chromatin remodeling factor negatively regulates cytokinin responses in Arabidopsis calli.

Authors:  Kaori Furuta; Minoru Kubo; Kiyomi Sano; Taku Demura; Hiroo Fukuda; Yao-Guang Liu; Daisuke Shibata; Tatsuo Kakimoto
Journal:  Plant Cell Physiol       Date:  2011-02-25       Impact factor: 4.927

8.  Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca.

Authors:  Karsten Temme; Dehua Zhao; Christopher A Voigt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

9.  Cytokinins secreted by Agrobacterium promote transformation by repressing a plant myb transcription factor.

Authors:  Nagesh Sardesai; Lan-Ying Lee; Huabang Chen; Hochul Yi; Gayla R Olbricht; Alexandra Stirnberg; Jacob Jeffries; Kia Xiong; R W Doerge; Stanton B Gelvin
Journal:  Sci Signal       Date:  2013-11-19       Impact factor: 8.192

10.  Ensifer-mediated transformation: an efficient non-Agrobacterium protocol for the genetic modification of rice.

Authors:  Evelyn Zuniga-Soto; Ewen Mullins; Beata Dedicova
Journal:  Springerplus       Date:  2015-10-13
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  132 in total

Review 1.  Synthetic genetic circuits in crop plants.

Authors:  Orlando de Lange; Eric Klavins; Jennifer Nemhauser
Journal:  Curr Opin Biotechnol       Date:  2017-07-31       Impact factor: 9.740

2.  A Novel Ternary Vector System United with Morphogenic Genes Enhances CRISPR/Cas Delivery in Maize.

Authors:  Qiang Zhang; Yu Zhang; Min-Hui Lu; Yi-Ping Chai; Yuan-Yuan Jiang; Yun Zhou; Xue-Chen Wang; Qi-Jun Chen
Journal:  Plant Physiol       Date:  2019-09-26       Impact factor: 8.340

Review 3.  Genetic modification in Malaysia and India: current regulatory framework and the special case of non-transformative RNAi in agriculture.

Authors:  Jasdeep Kaur Darsan Singh; Nurzatil Sharleeza Mat Jalaluddin; Neeti Sanan-Mishra; Jennifer Ann Harikrishna
Journal:  Plant Cell Rep       Date:  2019-07-26       Impact factor: 4.570

4.  DNA nanostructures coordinate gene silencing in mature plants.

Authors:  Huan Zhang; Gozde S Demirer; Honglu Zhang; Tianzheng Ye; Natalie S Goh; Abhishek J Aditham; Francis J Cunningham; Chunhai Fan; Markita P Landry
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-25       Impact factor: 11.205

Review 5.  Applying gene editing to tailor precise genetic modifications in plants.

Authors:  Joyce Van Eck
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

6.  Targeted DNA insertion in plants.

Authors:  Oliver Xiaoou Dong; Pamela C Ronald
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-30       Impact factor: 11.205

Review 7.  Virus-Induced Flowering: An Application of Reproductive Biology to Benefit Plant Research and Breeding.

Authors:  Roisin C McGarry; Amy L Klocko; Mingxiong Pang; Steven H Strauss; Brian G Ayre
Journal:  Plant Physiol       Date:  2016-11-17       Impact factor: 8.340

8.  Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs.

Authors:  Evan E Ellison; Ugrappa Nagalakshmi; Maria Elena Gamo; Pin-Jui Huang; Savithramma Dinesh-Kumar; Daniel F Voytas
Journal:  Nat Plants       Date:  2020-06-01       Impact factor: 15.793

9.  Efficient CRISPR-mediated base editing in Agrobacterium spp.

Authors:  Savio D Rodrigues; Mansour Karimi; Lennert Impens; Els Van Lerberge; Griet Coussens; Stijn Aesaert; Debbie Rombaut; Dominique Holtappels; Heba M M Ibrahim; Marc Van Montagu; Jeroen Wagemans; Thomas B Jacobs; Barbara De Coninck; Laurens Pauwels
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-21       Impact factor: 11.205

Review 10.  A systematic analysis of apple root resistance traits to Pythium ultimum infection and the underpinned molecular regulations of defense activation.

Authors:  Yanmin Zhu; Melody Saltzgiver
Journal:  Hortic Res       Date:  2020-05-01       Impact factor: 6.793

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