Literature DB >> 34050013

Targeted DNA insertion in plants.

Oliver Xiaoou Dong1,2,3,4, Pamela C Ronald5,2,3,4.   

Abstract

Conventional methods of DNA sequence insertion into plants, using Agrobacterium-mediated transformation or microprojectile bombardment, result in the integration of the DNA at random sites in the genome. These plants may exhibit altered agronomic traits as a consequence of disruption or silencing of genes that serve a critical function. Also, genes of interest inserted at random sites are often not expressed at the desired level. For these reasons, targeted DNA insertion at suitable genomic sites in plants is a desirable alternative. In this paper we review approaches of targeted DNA insertion in plant genomes, discuss current technical challenges, and describe promising applications of targeted DNA insertion for crop genetic improvement.

Keywords:  gene stacking; plant genetic engineering; plant genetics; plant genome editing; targeted gene insertion

Year:  2021        PMID: 34050013      PMCID: PMC8179203          DOI: 10.1073/pnas.2004834117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  167 in total

1.  Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced.

Authors:  C D Day; E Lee; J Kobayashi; L D Holappa; H Albert; D W Ow
Journal:  Genes Dev       Date:  2000-11-15       Impact factor: 11.361

2.  Tissue- and site-specific DNA recombination in transgenic mice.

Authors:  P C Orban; D Chui; J D Marth
Journal:  Proc Natl Acad Sci U S A       Date:  1992-08-01       Impact factor: 11.205

Review 3.  Genetic engineering for modern agriculture: challenges and perspectives.

Authors:  Ron Mittler; Eduardo Blumwald
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

Review 4.  Genome engineering with zinc-finger nucleases.

Authors:  Dana Carroll
Journal:  Genetics       Date:  2011-08       Impact factor: 4.562

5.  An open-source system for in planta gene stacking by Bxb1 and Cre recombinases.

Authors:  Lili Hou; Yuan-Yeu Yau; Junjie Wei; Zhiguo Han; Zhicheng Dong; David W Ow
Journal:  Mol Plant       Date:  2014-10-03       Impact factor: 13.164

6.  Genome-Scale Sequence Disruption Following Biolistic Transformation in Rice and Maize.

Authors:  Jianing Liu; Natalie J Nannas; Fang-Fang Fu; Jinghua Shi; Brooke Aspinwall; Wayne A Parrott; R Kelly Dawe
Journal:  Plant Cell       Date:  2019-01-16       Impact factor: 11.277

7.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

Review 8.  Precise Genome Modification via Sequence-Specific Nucleases-Mediated Gene Targeting for Crop Improvement.

Authors:  Yongwei Sun; Jingying Li; Lanqin Xia
Journal:  Front Plant Sci       Date:  2016-12-20       Impact factor: 5.753

9.  High-Resolution Analysis of the Efficiency, Heritability, and Editing Outcomes of CRISPR/Cas9-Induced Modifications of NCED4 in Lettuce (Lactuca sativa).

Authors:  Lien D Bertier; Mily Ron; Heqiang Huo; Kent J Bradford; Anne B Britt; Richard W Michelmore
Journal:  G3 (Bethesda)       Date:  2018-05-04       Impact factor: 3.154

10.  High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects.

Authors:  Benjamin P Kleinstiver; Vikram Pattanayak; Michelle S Prew; Shengdar Q Tsai; Nhu T Nguyen; Zongli Zheng; J Keith Joung
Journal:  Nature       Date:  2016-01-06       Impact factor: 49.962

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  16 in total

1.  Nonhomologous end joining as key to CRISPR/Cas-mediated plant chromosome engineering.

Authors:  Fabienne Gehrke; Angelina Schindele; Holger Puchta
Journal:  Plant Physiol       Date:  2022-03-28       Impact factor: 8.340

2.  Improvement of recombinant miraculin production in transgenic tomato by crossbreeding-based genetic background modification.

Authors:  Kyoko Hiwasa-Tanase; Suzuno Ohmura; Natsumi Kitazawa; Azusa Ono; Takeshi Suzuki; Hiroshi Ezura
Journal:  Transgenic Res       Date:  2022-08-17       Impact factor: 3.145

3.  Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome.

Authors:  Matthew G Durrant; Alison Fanton; Josh Tycko; Michaela Hinks; Sita S Chandrasekaran; Nicholas T Perry; Julia Schaepe; Peter P Du; Peter Lotfy; Michael C Bassik; Lacramioara Bintu; Ami S Bhatt; Patrick D Hsu
Journal:  Nat Biotechnol       Date:  2022-10-10       Impact factor: 68.164

4.  Split-Cre mediated deletion of DNA no longer needed after site-specific integration in rice.

Authors:  Qian Yin; Ruyu Li; David W Ow
Journal:  Theor Appl Genet       Date:  2022-05-21       Impact factor: 5.574

Review 5.  Green Revolution to Gene Revolution: Technological Advances in Agriculture to Feed the World.

Authors:  Mohd Fadhli Hamdan; Siti Nurfadhlina Mohd Noor; Nazrin Abd-Aziz; Teen-Lee Pua; Boon Chin Tan
Journal:  Plants (Basel)       Date:  2022-05-12

6.  Life 2.0-A CRISPR path to a sustainable planet.

Authors:  Dana Carroll; Barbara J Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-01       Impact factor: 11.205

7.  Editorial: New Genome Editing Tools and Resources: Enabling Gene Discovery and Functional Genomics.

Authors:  Wendy Harwood; Qi-Jun Chen; Feng Zhang; Bing Yang
Journal:  Front Genome Ed       Date:  2021-10-08

8.  Site-Specific Sequence Exchange Between Homologous and Non-homologous Chromosomes.

Authors:  Qian Yin; Ruyu Li; David W Ow
Journal:  Front Plant Sci       Date:  2022-02-03       Impact factor: 5.753

Review 9.  Advances in Delivery Mechanisms of CRISPR Gene-Editing Reagents in Plants.

Authors:  Larissa C Laforest; Satya Swathi Nadakuduti
Journal:  Front Genome Ed       Date:  2022-01-24

10.  Principles of Nanoparticle Design for Genome Editing in Plants.

Authors:  Pushkal Sharma; Tedrick Thomas Salim Lew
Journal:  Front Genome Ed       Date:  2022-03-07
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