Literature DB >> 27335152

Spoligotyping of Mycobacterium tuberculosis Complex Isolates by Use of Ligation-Based Amplification and Melting Curve Analysis.

Xiaohong Zeng1, Hui Li2, Rongrong Zheng3, Natalia Kurepina4, Barry N Kreiswirth4, Xilin Zhao5, Ye Xu6, Qingge Li6.   

Abstract

We report here a ligation-based spoligotyping that can identify unamplified spacers in membrane-based spoligotyping due to asymmetric insertion of IS6110 in the direct repeat locus. Our typing yielded 84.4% (411/487) concordance with traditional typing and 100% (487/487) accuracy when confirmed by DNA sequencing.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID： 27335152      PMCID： PMC5005503          DOI： 10.1128/JCM.00857-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  20 in total

1.  Rapid spoligotyping of Mycobacterium tuberculosis complex bacteria by use of a microarray system with automatic data processing and assignment.

Authors:  Anke Ruettger; Johanna Nieter; Artem Skrypnyk; Ines Engelmann; Albrecht Ziegler; Irmgard Moser; Stefan Monecke; Ralf Ehricht; Konrad Sachse
Journal:  J Clin Microbiol       Date:  2012-05-02       Impact factor: 5.948

2.  IS6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains.

Authors:  Z Fang; N Morrison; B Watt; C Doig; K J Forbes
Journal:  J Bacteriol       Date:  1998-04       Impact factor: 3.490

3.  A DNA chip-based spoligotyping method for the strain identification of Mycobacterium tuberculosis isolates.

Authors:  Eun Ju Song; Hae Jin Jeong; Sun Min Lee; Cheol Min Kim; Eun Sil Song; Young Kil Park; Gill-Han Bai; Eun Yup Lee; Chulhun L Chang
Journal:  J Microbiol Methods       Date:  2006-10-12       Impact factor: 2.363

4.  Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology.

Authors:  J Kamerbeek; L Schouls; A Kolk; M van Agterveld; D van Soolingen; S Kuijper; A Bunschoten; H Molhuizen; R Shaw; M Goyal; J van Embden
Journal:  J Clin Microbiol       Date:  1997-04       Impact factor: 5.948

5.  Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria.

Authors:  J D van Embden; T van Gorkom; K Kremer; R Jansen; B A van Der Zeijst; L M Schouls
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

6.  Spoligotyping of Mycobacterium tuberculosis complex isolates using hydrogel oligonucleotide microarrays.

Authors:  Julia A Bespyatykh; Danila V Zimenkov; Egor A Shitikov; Elena V Kulagina; Sergey A Lapa; Dmitry A Gryadunov; Elena N Ilina; Vadim M Govorun
Journal:  Infect Genet Evol       Date:  2014-05-09       Impact factor: 3.342

7.  MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria.

Authors:  Thomas Weniger; Justina Krawczyk; Philip Supply; Stefan Niemann; Dag Harmsen
Journal:  Nucleic Acids Res       Date:  2010-05-10       Impact factor: 16.971

8.  Risk factors and clinical phenotypes of Beijing genotype strains in tuberculosis patients in China.

Authors:  Yu Pang; Yuanyuan Song; Hui Xia; Yang Zhou; Bing Zhao; Yanlin Zhao
Journal:  BMC Infect Dis       Date:  2012-12-17       Impact factor: 3.090

9.  Combination of fluorescence color and melting temperature as a two-dimensional label for homogeneous multiplex PCR detection.

Authors:  Yiqun Liao; Xiaobo Wang; Chao Sha; Zhongmin Xia; Qiuying Huang; Qingge Li
Journal:  Nucleic Acids Res       Date:  2013-01-18       Impact factor: 16.971

10.  Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology.

Authors:  Karine Brudey; Jeffrey R Driscoll; Leen Rigouts; Wolfgang M Prodinger; Andrea Gori; Sahal A Al-Hajoj; Caroline Allix; Liselotte Aristimuño; Jyoti Arora; Viesturs Baumanis; Lothar Binder; Patricia Cafrune; Angel Cataldi; Soonfatt Cheong; Roland Diel; Christopher Ellermeier; Jason T Evans; Maryse Fauville-Dufaux; Séverine Ferdinand; Dario Garcia de Viedma; Carlo Garzelli; Lidia Gazzola; Harrison M Gomes; M Cristina Guttierez; Peter M Hawkey; Paul D van Helden; Gurujaj V Kadival; Barry N Kreiswirth; Kristin Kremer; Milan Kubin; Savita P Kulkarni; Benjamin Liens; Troels Lillebaek; Minh Ly Ho; Carlos Martin; Christian Martin; Igor Mokrousov; Olga Narvskaïa; Yun Fong Ngeow; Ludmilla Naumann; Stefan Niemann; Ida Parwati; Zeaur Rahim; Voahangy Rasolofo-Razanamparany; Tiana Rasolonavalona; M Lucia Rossetti; Sabine Rüsch-Gerdes; Anna Sajduda; Sofia Samper; Igor G Shemyakin; Urvashi B Singh; Akos Somoskovi; Robin A Skuce; Dick van Soolingen; Elisabeth M Streicher; Philip N Suffys; Enrico Tortoli; Tatjana Tracevska; Véronique Vincent; Tommie C Victor; Robin M Warren; Sook Fan Yap; Khadiza Zaman; Françoise Portaels; Nalin Rastogi; Christophe Sola
Journal:  BMC Microbiol       Date:  2006-03-06       Impact factor: 3.605
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  7 in total

1.  Rapid Identification of Clinically Relevant Mycobacterium Species by Multicolor Melting Curve Analysis.

Authors:  Ye Xu; Bin Liang; Chen Du; Xueshan Tian; Xingshan Cai; Yanjie Hou; Hui Li; Rongrong Zheng; Junlian Li; Yuqin Liu; Kaili Wang; Muhammad Ammar Athar; Yaoju Tan; Qingge Li
Journal:  J Clin Microbiol       Date:  2019-01-02       Impact factor: 5.948

2.  McSpoligotyping, a One-Step Melting Curve Analysis-Based Protocol for Spoligotyping of Mycobacterium tuberculosis.

Authors:  Xiaohong Zeng; Ye Xu; Yang Zhou; Hui Li; Rongrong Zheng; Yaoju Tan; Bingqi Sun; Yanlin Zhao; Qingge Li
Journal:  J Clin Microbiol       Date:  2018-07-26       Impact factor: 5.948

3.  One-step melting curve analysis-based McSpoligotyping reveals genotypes of Mycobacterium tuberculosis in a coastal city, China.

Authors:  Jieru Pan; Haimei Ye; Zhuda Wu; Jianbin Xiao; Jie Liu
Journal:  Arch Microbiol       Date:  2021-06-22       Impact factor: 2.552

4.  Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and In Silico Approach.

Authors:  Charlotte Genestet; Elisabeth Hodille; Albin Bernard; Maxime Vallée; Gérard Lina; Adrien Le Meur; Guislaine Refrégier; Oana Dumitrescua
Journal:  Microbiol Spectr       Date:  2022-04-25

5.  Molecular epidemiology and genetic diversity of Mycobacterium tuberculosis complex in referral health centers of Bamako, Mali: What is new?

Authors:  Bourahima Kone; Anou M Somboro; Mahamadou Kone; Jane L Holl; Bocar Baya; Djeneba Dabitao; Dramane Diallo; Bassirou Diarra; Amadou Kone; Yeya Dit Sadio Sarro; Moumine Sanogo; Antieme Cg Togo; Robert L Murphy; Souleymane Diallo; Nadie Coulibaly; Fatoumata Camara; Seydou Samake; Mahamadou Diakite; Seydou Doumbia; Mamoudou Maiga
Journal:  Int J Infect Dis       Date:  2022-02-05       Impact factor: 12.074

6.  Development, Evaluation, and Implementation of a House-Made Targeted Next-Generation Sequencing Spoligotyping in a French Laboratory.

Authors:  Charlotte Genestet; Yannick Baffert; Maxime Vallée; Albin Bernard; Yvonne Benito; Gérard Lina; Elisabeth Hodille; Oana Dumitrescu
Journal:  Int J Mol Sci       Date:  2022-09-25       Impact factor: 6.208

Review 7.  Mycobacterium bovis: From Genotyping to Genome Sequencing.

Authors:  Ana M S Guimaraes; Cristina K Zimpel
Journal:  Microorganisms       Date:  2020-05-03
  7 in total

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