Literature DB >> 22553239

Rapid spoligotyping of Mycobacterium tuberculosis complex bacteria by use of a microarray system with automatic data processing and assignment.

Anke Ruettger1, Johanna Nieter, Artem Skrypnyk, Ines Engelmann, Albrecht Ziegler, Irmgard Moser, Stefan Monecke, Ralf Ehricht, Konrad Sachse.   

Abstract

Membrane-based spoligotyping has been converted to DNA microarray format to qualify it for high-throughput testing. We have shown the assay's validity and suitability for direct typing from tissue and detecting new spoligotypes. Advantages of the microarray methodology include rapidity, ease of operation, automatic data processing, and affordability.

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Year:  2012        PMID： 22553239      PMCID： PMC3405571          DOI： 10.1128/JCM.00442-12

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  10 in total

1.  Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature.

Authors:  J W Dale; D Brittain; A A Cataldi; D Cousins; J T Crawford; J Driscoll; H Heersma; T Lillebaek; T Quitugua; N Rastogi; R A Skuce; C Sola; D Van Soolingen; V Vincent
Journal:  Int J Tuberc Lung Dis       Date:  2001-03       Impact factor: 2.373

2.  Human Mycobacterium bovis infections in London and Southeast England.

Authors:  M J Stone; T J Brown; F A Drobniewski
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

3.  Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system.

Authors:  Lauren S Cowan; Lois Diem; Mary Catherine Brake; Jack T Crawford
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

Review 4.  Bottlenecks and broomsticks: the molecular evolution of Mycobacterium bovis.

Authors:  Noel H Smith; Stephen V Gordon; Ricardo de la Rua-Domenech; Richard S Clifton-Hadley; R Glyn Hewinson
Journal:  Nat Rev Microbiol       Date:  2006-09       Impact factor: 60.633

Review 5.  Spoligotyping for molecular epidemiology of the Mycobacterium tuberculosis complex.

Authors:  Jeffrey R Driscoll
Journal:  Methods Mol Biol       Date:  2009

6.  Replacing reverse line blot hybridization spoligotyping of the Mycobacterium tuberculosis complex.

Authors:  Christiane Honisch; Michael Mosko; Catherine Arnold; Saheer E Gharbia; Roland Diel; Stefan Niemann
Journal:  J Clin Microbiol       Date:  2010-03-03       Impact factor: 5.948

7.  Naming spoligotype patterns for the RD9-deleted lineage of the Mycobacterium tuberculosis complex; www.Mbovis.org.

Authors:  Noel H Smith; Paul Upton
Journal:  Infect Genet Evol       Date:  2011-08-10       Impact factor: 3.342

8.  Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology.

Authors:  J Kamerbeek; L Schouls; A Kolk; M van Agterveld; D van Soolingen; S Kuijper; A Bunschoten; H Molhuizen; R Shaw; M Goyal; J van Embden
Journal:  J Clin Microbiol       Date:  1997-04       Impact factor: 5.948

9.  Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology.

Authors:  Karine Brudey; Jeffrey R Driscoll; Leen Rigouts; Wolfgang M Prodinger; Andrea Gori; Sahal A Al-Hajoj; Caroline Allix; Liselotte Aristimuño; Jyoti Arora; Viesturs Baumanis; Lothar Binder; Patricia Cafrune; Angel Cataldi; Soonfatt Cheong; Roland Diel; Christopher Ellermeier; Jason T Evans; Maryse Fauville-Dufaux; Séverine Ferdinand; Dario Garcia de Viedma; Carlo Garzelli; Lidia Gazzola; Harrison M Gomes; M Cristina Guttierez; Peter M Hawkey; Paul D van Helden; Gurujaj V Kadival; Barry N Kreiswirth; Kristin Kremer; Milan Kubin; Savita P Kulkarni; Benjamin Liens; Troels Lillebaek; Minh Ly Ho; Carlos Martin; Christian Martin; Igor Mokrousov; Olga Narvskaïa; Yun Fong Ngeow; Ludmilla Naumann; Stefan Niemann; Ida Parwati; Zeaur Rahim; Voahangy Rasolofo-Razanamparany; Tiana Rasolonavalona; M Lucia Rossetti; Sabine Rüsch-Gerdes; Anna Sajduda; Sofia Samper; Igor G Shemyakin; Urvashi B Singh; Akos Somoskovi; Robin A Skuce; Dick van Soolingen; Elisabeth M Streicher; Philip N Suffys; Enrico Tortoli; Tatjana Tracevska; Véronique Vincent; Tommie C Victor; Robin M Warren; Sook Fan Yap; Khadiza Zaman; Françoise Portaels; Nalin Rastogi; Christophe Sola
Journal:  BMC Microbiol       Date:  2006-03-06       Impact factor: 3.605

10.  Using GIS technology to identify areas of tuberculosis transmission and incidence.

Authors:  Patrick K Moonan; Manuel Bayona; Teresa N Quitugua; Joseph Oppong; Denise Dunbar; Kenneth C Jost; Gerry Burgess; Karan P Singh; Stephen E Weis
Journal:  Int J Health Geogr       Date:  2004-10-13       Impact factor: 3.918
  10 in total
  18 in total

1.  Mycobacterium bovis Persistence in Two Different Captive Wild Animal Populations in Germany: a Longitudinal Molecular Epidemiological Study Revealing Pathogen Transmission by Whole-Genome Sequencing.

Authors:  Thomas A Kohl; Christian Utpatel; Stefan Niemann; Irmgard Moser
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

2.  Spoligotyping of Mycobacterium tuberculosis Complex Isolates by Use of Ligation-Based Amplification and Melting Curve Analysis.

Authors:  Xiaohong Zeng; Hui Li; Rongrong Zheng; Natalia Kurepina; Barry N Kreiswirth; Xilin Zhao; Ye Xu; Qingge Li
Journal:  J Clin Microbiol       Date:  2016-06-22       Impact factor: 5.948

3.  McSpoligotyping, a One-Step Melting Curve Analysis-Based Protocol for Spoligotyping of Mycobacterium tuberculosis.

Authors:  Xiaohong Zeng; Ye Xu; Yang Zhou; Hui Li; Rongrong Zheng; Yaoju Tan; Bingqi Sun; Yanlin Zhao; Qingge Li
Journal:  J Clin Microbiol       Date:  2018-07-26       Impact factor: 5.948

4.  Population Structure of Mycobacterium bovis in Germany: a Long-Term Study Using Whole-Genome Sequencing Combined with Conventional Molecular Typing Methods.

Authors:  Thierry Wirth; Stefan Niemann; Irmgard Moser; Thomas A Kohl; Katharina Kranzer; Sönke Andres
Journal:  J Clin Microbiol       Date:  2020-10-21       Impact factor: 5.948

5.  Molecular and genomic features of Mycobacterium bovis strain 1595 isolated from Korean cattle.

Authors:  Narae Kim; Yunho Jang; Jin Kyoung Kim; Soyoon Ryoo; Ka Hee Kwon; Miso Kim; Shin Seok Kang; Hyeon Seop Byeon; Hee Soo Lee; Young-Hee Lim; Jae-Myung Kim
Journal:  J Vet Sci       Date:  2017-08-31       Impact factor: 1.672

6.  A Novel Pan-Flavivirus Detection and Identification Assay Based on RT-qPCR and Microarray.

Authors:  Ariel Vina-Rodriguez; Konrad Sachse; Ute Ziegler; Serafeim C Chaintoutis; Markus Keller; Martin H Groschup; Martin Eiden
Journal:  Biomed Res Int       Date:  2017-05-24       Impact factor: 3.411

7.  Epidemiological tracing of bovine tuberculosis in Switzerland, multilocus variable number of tandem repeat analysis of Mycobacterium bovis and Mycobacterium caprae.

Authors:  Giovanni Ghielmetti; Simone Scherrer; Ute Friedel; Daniel Frei; Dominique Suter; Lukas Perler; Max M Wittenbrink
Journal:  PLoS One       Date:  2017-02-21       Impact factor: 3.240

8.  A study of tuberculosis in road traffic-killed badgers on the edge of the British bovine TB epidemic area.

Authors:  Elsa Sandoval Barron; Ben Swift; Julian Chantrey; Robert Christley; Richard Gardner; Chris Jewell; Ian McGrath; Andrew Mitchell; Colman O'Cathail; Alison Prosser; Sue Ridout; Gonzalo Sanchez-Cabezudo; Noel Smith; Dorina Timofte; Nicola Williams; Malcolm Bennett
Journal:  Sci Rep       Date:  2018-12-06       Impact factor: 4.379

9.  SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads.

Authors:  Eryu Xia; Yik-Ying Teo; Rick Twee-Hee Ong
Journal:  Genome Med       Date:  2016-02-17       Impact factor: 11.117

Review 10.  Mycobacterium bovis: From Genotyping to Genome Sequencing.

Authors:  Ana M S Guimaraes; Cristina K Zimpel
Journal:  Microorganisms       Date:  2020-05-03
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