Literature DB >> 27276246

Ensemble View of RNAs and Proteins: Loops, Knots, Territories, and Evolution.

Alexander Y Grosberg1.   

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Year:  2016        PMID： 27276246      PMCID： PMC4906437          DOI： 10.1016/j.bpj.2016.04.021

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  13 in total

1.  Coalescence Model for Crumpled Globules Formed in Polymer Collapse.

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2.  Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring Polymers.

Authors:  Ting Ge; Sergey Panyukov; Michael Rubinstein
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3.  Absence of knots in known RNA structures.

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Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

Review 4.  From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

Authors:  Jonathan D Halverson; Jan Smrek; Kurt Kremer; Alexander Y Grosberg
Journal:  Rep Prog Phys       Date:  2014-01-28

5.  Ring polymers in the melt state: the physics of crumpling.

Authors:  Angelo Rosa; Ralf Everaers
Journal:  Phys Rev Lett       Date:  2014-03-18       Impact factor: 9.161

6.  Extruding Loops to Make Loopy Globules?

Authors:  Alexander Y Grosberg
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

7.  Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.

Authors:  Adrian L Sanborn; Suhas S P Rao; Su-Chen Huang; Neva C Durand; Miriam H Huntley; Andrew I Jewett; Ivan D Bochkov; Dharmaraj Chinnappan; Ashok Cutkosky; Jian Li; Kristopher P Geeting; Andreas Gnirke; Alexandre Melnikov; Doug McKenna; Elena K Stamenova; Eric S Lander; Erez Lieberman Aiden
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

8.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

9.  KnotProt: a database of proteins with knots and slipknots.

Authors:  Michal Jamroz; Wanda Niemyska; Eric J Rawdon; Andrzej Stasiak; Kenneth C Millett; Piotr Sułkowski; Joanna I Sulkowska
Journal:  Nucleic Acids Res       Date:  2014-10-31       Impact factor: 16.971

10.  Chromosome Compaction by Active Loop Extrusion.

Authors:  Anton Goloborodko; John F Marko; Leonid A Mirny
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033
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