Literature DB >> 24702424

Ring polymers in the melt state: the physics of crumpling.

Angelo Rosa1, Ralf Everaers2.   

Abstract

The conformational statistics of ring polymers in melts or dense solutions is strongly affected by their quenched microscopic topological state. The effect is particularly strong for nonconcatenated unknotted rings, which are known to crumple and segregate and which have been implicated as models for the generic behavior of interphase chromosomes. Here we use a computationally efficient multiscale approach to show that melts of rings of total contour length Lr can be quantitatively mapped onto melts of interacting lattice trees with gyration radii ⟨R(g)(2)(Lr)⟩ ∝ L(r)(2ν) and ν = 0.32 ± 0.01.

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Year:  2014        PMID: 24702424     DOI: 10.1103/PhysRevLett.112.118302

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  22 in total

1.  Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring Polymers.

Authors:  Ting Ge; Sergey Panyukov; Michael Rubinstein
Journal:  Macromolecules       Date:  2016       Impact factor: 5.985

2.  Unexpected Stretching of Entangled Ring Macromolecules.

Authors:  Q Huang; J Ahn; D Parisi; T Chang; O Hassager; S Panyukov; M Rubinstein; D Vlassopoulos
Journal:  Phys Rev Lett       Date:  2019-05-24       Impact factor: 9.161

Review 3.  Ensemble View of RNAs and Proteins: Loops, Knots, Territories, and Evolution.

Authors:  Alexander Y Grosberg
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

4.  Flory theory of randomly branched polymers.

Authors:  Ralf Everaers; Alexander Y Grosberg; Michael Rubinstein; Angelo Rosa
Journal:  Soft Matter       Date:  2017-02-08       Impact factor: 3.679

5.  Computational 3D genome modeling using Chrom3D.

Authors:  Jonas Paulsen; Tharvesh Moideen Liyakat Ali; Philippe Collas
Journal:  Nat Protoc       Date:  2018-04-26       Impact factor: 13.491

6.  Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.

Authors:  Fabrizio Benedetti; Aleksandre Japaridze; Julien Dorier; Dusan Racko; Robert Kwapich; Yannis Burnier; Giovanni Dietler; Andrzej Stasiak
Journal:  Nucleic Acids Res       Date:  2015-02-04       Impact factor: 16.971

7.  Influence of network defects on the conformational structure of nanogel particles: From "closed compact" to "open fractal" nanogel particles.

Authors:  Alexandros Chremos; Ferenc Horkay; Jack F Douglas
Journal:  J Chem Phys       Date:  2022-03-07       Impact factor: 3.488

8.  A topologically driven glass in ring polymers.

Authors:  Davide Michieletto; Matthew S Turner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-26       Impact factor: 11.205

9.  Topological tuning of DNA mobility in entangled solutions of supercoiled plasmids.

Authors:  Jan Smrek; Jonathan Garamella; Rae Robertson-Anderson; Davide Michieletto
Journal:  Sci Adv       Date:  2021-05-12       Impact factor: 14.136

10.  Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains.

Authors:  Daniel Jost; Pascal Carrivain; Giacomo Cavalli; Cédric Vaillant
Journal:  Nucleic Acids Res       Date:  2014-08-04       Impact factor: 16.971

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