Literature DB >> 27057066

Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring Polymers.

Ting Ge1, Sergey Panyukov2, Michael Rubinstein1.   

Abstract

A scaling model of self-similar conformations and dynamics of nonconcatenated entangled ring polymers is developed. Topological constraints force these ring polymers into compact conformations with fractal dimension df = 3 that we call fractal loopy globules (FLGs). This result is based on the conjecture that the overlap parameter of subsections of rings on all length scales is the same and equal to the Kavassalis-Noolandi number OKN ≈ 10-20. The dynamics of entangled rings is self-similar and proceeds as loops of increasing sizes are rearranged progressively at their respective diffusion times. The topological constraints associated with smaller rearranged loops affect the dynamics of larger loops through increasing the effective friction coefficient but have no influence on the entanglement tubes confining larger loops. As a result, the tube diameter defined as the average spacing between relevant topological constraints increases with time t, leading to "tube dilation". Analysis of the primitive paths in molecular dynamics simulations suggests a complete tube dilation with the tube diameter on the order of the time-dependent characteristic loop size. A characteristic loop at time t is defined as a ring section that has diffused a distance equal to its size during time t. We derive dynamic scaling exponents in terms of fractal dimensions of an entangled ring and the underlying primitive path and a parameter characterizing the extent of tube dilation. The results reproduce the predictions of different dynamic models of a single nonconcatenated entangled ring. We demonstrate that traditional generalization of single-ring models to multi-ring dynamics is not self-consistent and develop a FLG model with self-consistent multi-ring dynamics and complete tube dilation. This selfconsistent FLG model predicts that the longest relaxation time of nonconcatenated entangled ring polymers scales with their degree of polymerization N as τrelax ~ N7/3, while the diffusion coefficient of these rings scales as D3d ~ N-5/3. For the entangled solutions and melts of rings, we predict power law stress relaxation function G(t) ~ t-3/7 at t < τrelax without a rubbery plateau and the corresponding viscosity scaling with the degree of polymerization N as η ~ N4/3. These theoretical predictions are in good agreement with recent computer simulations and are consistent with experiments of melts of nonconcatenated entangled rings.

Entities:  

Year:  2016        PMID: 27057066      PMCID: PMC4819263          DOI: 10.1021/acs.macromol.5b02319

Source DB:  PubMed          Journal:  Macromolecules        ISSN: 0024-9297            Impact factor:   5.985


  16 in total

1.  Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. II. Dynamics.

Authors:  Jonathan D Halverson; Won Bo Lee; Gary S Grest; Alexander Y Grosberg; Kurt Kremer
Journal:  J Chem Phys       Date:  2011-05-28       Impact factor: 3.488

2.  Dynamics of a ring polymer in a gel.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-08-29       Impact factor: 9.161

3.  Dynamics of ring polymers in the presence of fixed obstacles.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-12-15       Impact factor: 9.161

4.  Molecular dynamics simulation study of nonconcatenated ring polymers in a melt. I. Statics.

Authors:  Jonathan D Halverson; Won Bo Lee; Gary S Grest; Alexander Y Grosberg; Kurt Kremer
Journal:  J Chem Phys       Date:  2011-05-28       Impact factor: 3.488

Review 5.  From a melt of rings to chromosome territories: the role of topological constraints in genome folding.

Authors:  Jonathan D Halverson; Jan Smrek; Kurt Kremer; Alexander Y Grosberg
Journal:  Rep Prog Phys       Date:  2014-01-28

6.  Ring polymers in the melt state: the physics of crumpling.

Authors:  Angelo Rosa; Ralf Everaers
Journal:  Phys Rev Lett       Date:  2014-03-18       Impact factor: 9.161

7.  Annealed lattice animal model and Flory theory for the melt of non-concatenated rings: towards the physics of crumpling.

Authors:  Alexander Y Grosberg
Journal:  Soft Matter       Date:  2014-01-28       Impact factor: 3.679

8.  Stress relaxation in entangled melts of unlinked ring polymers.

Authors:  Scott T Milner; Jillian D Newhall
Journal:  Phys Rev Lett       Date:  2010-11-09       Impact factor: 9.161

9.  Viscosity of ring polymer melts.

Authors:  Rossana Pasquino; Thodoris C Vasilakopoulos; Youn Cheol Jeong; Hyojoon Lee; Simon Rogers; George Sakellariou; Jürgen Allgaier; Atsushi Takano; Ana R Brás; Taihyun Chang; Sebastian Gooßen; Wim Pyckhout-Hintzen; Andreas Wischnewski; Nikos Hadjichristidis; Dieter Richter; Michael Rubinstein; Dimitris Vlassopoulos
Journal:  ACS Macro Lett       Date:  2013       Impact factor: 6.903

10.  Rheology and microscopic topology of entangled polymeric liquids.

Authors:  Ralf Everaers; Sathish K Sukumaran; Gary S Grest; Carsten Svaneborg; Arvind Sivasubramanian; Kurt Kremer
Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

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  15 in total

1.  Unexpected Stretching of Entangled Ring Macromolecules.

Authors:  Q Huang; J Ahn; D Parisi; T Chang; O Hassager; S Panyukov; M Rubinstein; D Vlassopoulos
Journal:  Phys Rev Lett       Date:  2019-05-24       Impact factor: 9.161

2.  Topological Linking Drives Anomalous Thickening of Ring Polymers in Weak Extensional Flows.

Authors:  Thomas C O'Connor; Ting Ge; Michael Rubinstein; Gary S Grest
Journal:  Phys Rev Lett       Date:  2020-01-17       Impact factor: 9.161

3.  Extruding Loops to Make Loopy Globules?

Authors:  Alexander Y Grosberg
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

Review 4.  Ensemble View of RNAs and Proteins: Loops, Knots, Territories, and Evolution.

Authors:  Alexander Y Grosberg
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

5.  Flory theory of randomly branched polymers.

Authors:  Ralf Everaers; Alexander Y Grosberg; Michael Rubinstein; Angelo Rosa
Journal:  Soft Matter       Date:  2017-02-08       Impact factor: 3.679

6.  Stress relaxation in symmetric ring-linear polymer blends at low ring fractions.

Authors:  Daniele Parisi; Junyoung Ahn; Taihyun Chang; Dimitris Vlassopoulos; Michael Rubinstein
Journal:  Macromolecules       Date:  2020-02-20       Impact factor: 5.985

7.  Nonlinear rheometry of entangled polymeric rings and ring-linear blends.

Authors:  Daniele Parisi; Maria Kaliva; Salvatore Costanzo; Qian Huang; Pierre J Lutz; Junyoung Ahn; Taihyun Chang; Michael Rubinstein; Dimitris Vlassopoulos
Journal:  J Rheol (N Y N Y)       Date:  2021-06-21       Impact factor: 4.534

8.  Topological tuning of DNA mobility in entangled solutions of supercoiled plasmids.

Authors:  Jan Smrek; Jonathan Garamella; Rae Robertson-Anderson; Davide Michieletto
Journal:  Sci Adv       Date:  2021-05-12       Impact factor: 14.136

9.  Microtubule dynamics drive enhanced chromatin motion and mobilize telomeres in response to DNA damage.

Authors:  Josh Lawrimore; Timothy M Barry; Raymond M Barry; Alyssa C York; Brandon Friedman; Diana M Cook; Kristen Akialis; Jolien Tyler; Paula Vasquez; Elaine Yeh; Kerry Bloom
Journal:  Mol Biol Cell       Date:  2017-04-27       Impact factor: 4.138

10.  Nanoparticle Motion in Entangled Melts of Linear and Nonconcatenated Ring Polymers.

Authors:  Ting Ge; Jagannathan T Kalathi; Jonathan D Halverson; Gary S Grest; Michael Rubinstein
Journal:  Macromolecules       Date:  2017-02-13       Impact factor: 5.985

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