| Literature DB >> 27257848 |
Robbin R Vernooij1, Tanmaya Joshi, Evyenia Shaili1, Manja Kubeil, Dominique R T Appadoo2, Ekaterina I Izgorodina, Bim Graham3, Peter J Sadler1, Bayden R Wood, Leone Spiccia.
Abstract
We report a detailed study of a promising photoactivatable metal-based anticancer prodrug candidate, trans,trans,trans-[Pt(N3)2(OH)2(py)2] (C1; py = pyridine), using vibrational spectroscopic techniques. Attenuated total reflection Fourier transform infrared (ATR-FTIR), Raman, and synchrotron radiation far-IR (SR-FIR) spectroscopies were applied to obtain highly resolved ligand and Pt-ligand vibrations for C1 and its precursors (trans-[Pt(N3)2(py)2] (C2) and trans-[PtCl2(py)2] (C3)). Distinct IR- and Raman-active vibrational modes were assigned with the aid of density functional theory calculations, and trends in the frequency shifts as a function of changing Pt coordination environment were determined and detailed for the first time. The data provide the ligand and Pt-ligand (azide, hydroxide, pyridine) vibrational signatures for C1 in the mid- and far-IR region, which will provide a basis for the better understanding of the interaction of C1 with biomolecules.Entities:
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Year: 2016 PMID: 27257848 PMCID: PMC4916484 DOI: 10.1021/acs.inorgchem.6b00476
Source DB: PubMed Journal: Inorg Chem ISSN: 0020-1669 Impact factor: 5.165
Figure 1Structures of platinum complexes studied in this work: trans,trans,trans-[Pt(N3)2(OH)2(py)2] (C1), trans-[Pt(N3)2(py)2] (C2), and trans-[PtCl2(py)2] (C3).
Figure 2Lowest energy geometries optimized by DFT with PBE for C1, C3, C2–1, and C2–2. Calculations were performed with cc-pVDZ for C, H, N, and O and with cc-pVDZ-PP[44] with ECP for Pt using the CPCM with water as solvent.
Selected ATR-FTIR, Raman, SR-FIR, and Unscaled Theoretical Vibrational Bands of C1, C2, C3 (Solid), and C1′ (Dissolution of C1 in Water Followed by Evaporation Prior to Measurements)
| no. | vibrations | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IR | IR′ | Raman | Raman′ | calcd | IR | Raman | calcd | IR | Raman | calcd | ||||||||||
| 1 | υ(OH) | 3566 | s | 3551 | s | 3571 | w | 3560 | w | 3610 | ||||||||||
| 2 | υ(CHpy) | 3113–3009 | m - w | 3127–3014 | m - w | 3084 | m | 3094–3057 | m–w | 3185–3106 | 3116–3007 | m - w | 3087, 3072 | m | 3170–3138 | 3113–3005 | m - w | 3089–3069 | m- w | 3170–3139 |
| 3 | υasym(N3) | 2068 | s | |||||||||||||||||
| 4 | 2051 | vs | 2048 | s, sh | 2053 | s | 2053 | s | 2066 | vs | 2057 | w, br | ||||||||
| 5 | 2035 | s, sh | 2033 | vs | 2040 | w, sh | 2117 | 2039 | s, sh | 2114 | ||||||||||
| 6 | 2017 | vs | 2003 | m, sh | 2028 | m | 2101 | 2002 | s, sh | 2098 | ||||||||||
| 7 | 1984 | m, sh | 1979 | m, sh | 2018 | m | ||||||||||||||
| 8 | 1965 | m, sh | 1958 | m, sh | ||||||||||||||||
| 9 | 1942 | w, sh | 1947 | m, sh | 1942 | m, sh | ||||||||||||||
| 10 | δ(py) {A1, 8a} | 1611 | m | 1612 | m | 1611 | m | 1612 | m | 1615 | 1610 | m | 1611 | m | 1611 | 1608 | s | 1609 | m | 1612 |
| 11 | δ(py) {B2, 19b} | 1458 | s | 1460 | s | 1442 | 1455 | m | 1437 | 1451 | vs | 1437 | ||||||||
| 12 | υsym(N3) | 1292 | s | 1278 | m, sh | 1291 | w | 1290 | w | 1299 | 1325 | m | 1300 | |||||||
| 13 | 1271 | s | 1271 | s | 1282 | w | 1281 | w | 1290 | 1294 | m | 1298 | w | 1291 | ||||||
| 14 | δ(py) {B2, 18b} | 1074 | m | 1076 | m | 1078 | w | 1071 | 1077 | m | 1080 | w | 1067 | 1072 | s | 1079 | m | 1069 | ||
| 15 | δ(py) {A1, 12} | 1027 | s | 1028 | s | 1015 | 1025 | vs | 1015 | 1024 | vs | 1032 | ||||||||
| 16 | γ(py) {B1, 4} | 777 | s | 772 | s | 757 | 772 | m | 749 | 771 | vs | 751 | ||||||||
| 17 | γ(py) {B1, 11}, δ(N3) | 697 | s | 696 | s, sh | 693, 676 | 691 | vs | 676 | |||||||||||
| 18 | 684 | s, sh | 686 | s | 684 | s | 680 | s | 665, 667 | 696 | m | 675, 668 | ||||||||
| 19 | δ(py) {A1, 6a} | 660 | w | 656 | m | 662 | m, sh | 664 | m, sh | 640 | 670 | w, sh | 662 | w | 637 | 660 | w, sh | 664 | w | 639 |
| 20 | δ(py) {B2, 6b} | 645 | m | 647 | w, sh | 649 | m, sh | 633 | 650 | w | 647 | w | 634 | 649 | w | 634 | ||||
| 21 | γ(N3) | 584 | s | 582 | s | 584 | m, sh | 561 | 568 | s | 558 | |||||||||
| 22 | 573 | m | 571 | s | 560 | |||||||||||||||
| 23 | υasym(HO–Pt–OH) | 561 | w | |||||||||||||||||
| 24 | 553 | w, sh | ||||||||||||||||||
| 25 | 545 | s, sh | ||||||||||||||||||
| 26 | 541 | s | 529 | |||||||||||||||||
| 27 | υsym(HO–Pt–OH) | 540 | s | 524 | ||||||||||||||||
| 28 | γ(py) {B1, 16b} | 478 | m | 467 | 472 | s | 468 | 484 | m | 478 | ||||||||||
| 29 | υasym(N3–Pt–N3) | 417 | m, sh | |||||||||||||||||
| 30 | 413 | s | 389 | 408 | s | 384 | ||||||||||||||
| 31 | 407 | s | 400 | s | 382 | |||||||||||||||
| 32 | 395 | m | ||||||||||||||||||
| 33 | υsym(N3–Pt–N3) | 415 | vs | 414 | vs | 389 | 406 | m | 391 | |||||||||||
| 34 | υasym(Cl–Pt–Cl) | 346 | s | |||||||||||||||||
| 35 | 342 | s | 318 | |||||||||||||||||
| 36 | 339 | m, sh | ||||||||||||||||||
| 37 | scr(HO–Pt–OH), scr(N3–Pt–N3) | 301 | m | 309 | ||||||||||||||||
| 38 | υsym(Cl–Pt–Cl) | 324 | w | 326 | m | 302 | ||||||||||||||
| 39 | υasym(Cl–Pt–Cl) | 286 | s | 282 | ||||||||||||||||
| 40 | υasym(py–Pt–py) | 258 | w | 247 | 269 | s | 248 | 258 | w | 241 | ||||||||||
| 41 | υsym(py–Pt–py) | 217 | s | 217 | s | 214 | m, sh | 217 | 216 | m, sh | 214 | 216 | w | 214 | ||||||
| 42 | scr(Cl–Pt–Cl) | 169 | m | 150 | ||||||||||||||||
| 43 | δ(Pt–N3) out-of-phase | 140 | w, sh | 143 | s | 132 | s | 127 | 149 | w | 139 | s | 131 | |||||||
| 44 | δ(Pt–N3) in-phase | 125 | w | 120 | m, sh | 122 | m, sh | 105 | 131 | m | 123 | vs | 129 | |||||||
| 45 | wag(Cl–Pt–Cl) | 126 | m | 118 | ||||||||||||||||
| 46 | Lattice vibrations | 92 | m | 69 | ||||||||||||||||
| 47 | 87 | m | 59 | 83 | w | 68 | 83 | m | 49 | |||||||||||
| 48 | 81 | m, sh | ||||||||||||||||||
| 49 | 77 | m | 50 | |||||||||||||||||
| 50 | 46 | m | 43 | 59 | m, sh | 49 | 64 | m | 36 | |||||||||||
| 51 | 56 | m | 47 | |||||||||||||||||
Only the predominant and/or discussed vibrations are displayed; see Supporting Information for full descriptions.
Notations used: υ = stretch, δ = in-plane angle bending, γ = out-of-plane angle bending, wag = wagging, scr = scissoring, rot = rotation, sym = symmetric, and asym = asymmetric. Out-of-phase and in-phase notations refer to the phase between dissimilar vibrations or analogous vibrations when more than one of the same moieties exists. The descriptions of pyridine modes are given in Wilson’s notations; see Supporting Information Figure S2.[43]
Peak intensities: vs = very strong, s = strong, m = medium, w = weak, br = broad, and sh = shoulder.
4000–650 cm–1 = corrected ATR-FTIR and 650–0 cm–1 = SR-FIR at 77 K.
633 nm excitation.
Unscaled PBE vibrations; see Supporting Information for M06-2X results.
δ(N3) is overlapped by γ(py) {B1, 11} for C1.
Tentative assignment; this particular vibration could also be originating from υsym(HO–Pt–OH) for C1′.
υasym(py–Pt–py) is a combination band with scr(N3–Pt–N3) + rot(Pt–OH) for C1 and scr(N3–Pt–N3) for C2.
See text and Supporting Information for discussion of lattice vibrations.
Figure 3ATR-FTIR spectra of C1, C2, C3 (solid) and C1′ (dissolution of C1 in water followed by evaporation prior to measurements).
Figure 6SR-FIR spectra of solid C1, C2, and C3 measured at 77 K.
Figure 4ATR-FTIR spectra overlapped with the second derivative for C1 (solid), C2 (solid), and C1′ (dissolution of C1 in water followed by evaporation prior to measurements) highlighting υasym(N3) changes going from C2 to C1 and the effect of dissolution followed by evaporation of C1 prior to measurement (C1′).
Figure 5Visualization of the υasym(N3) in-phase (A) and υasym(N3) out-of-phase (B) in a model of C1. M06-2X/cc-pVDZ for C, H, N, and O and cc-pVDZ-PP[44] with ECP for Pt using the CPCM with water as solvent.
Figure 7Normalized Raman spectra of C1 (solid), C2 (solid), and C1′ (dissolution of C1 in water followed by evaporation prior to measurements).
Figure 8SR-FIR sample holders; (A) paraffin blank; (B) paraffin holding C1 (1 mg).