Literature DB >> 27249581

The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.

Che-Hsiung Hsu1,2, Sangho Park3, David E Mortenson1, B Lachele Foley4, Xiaocong Wang4, Robert J Woods4, David A Case5, Evan T Powers2, Chi-Huey Wong2,6,7, H Jane Dyson3, Jeffery W Kelly1,2,7.   

Abstract

Interactions between proteins and carbohydrates are ubiquitous in biology. Therefore, understanding the factors that determine their affinity and selectivity are correspondingly important. Herein, we have determined the relative strengths of intramolecular interactions between a series of monosaccharides and an aromatic ring close to the glycosylation site in an N-glycoprotein host. We employed the enhanced aromatic sequon, a structural motif found in the reverse turns of some N-glycoproteins, to facilitate face-to-face monosaccharide-aromatic interactions. A protein host was used because the dependence of the folding energetics on the identity of the monosaccharide can be accurately measured to assess the strength of the carbohydrate-aromatic interaction. Our data demonstrate that the carbohydrate-aromatic interaction strengths are moderately affected by changes in the stereochemistry and identity of the substituents on the pyranose rings of the sugars. Galactose seems to make the weakest and allose the strongest sugar-aromatic interactions, with glucose, N-acetylglucosamine (GlcNAc) and mannose in between. The NMR solution structures of several of the monosaccharide-containing N-glycoproteins were solved to further understand the origins of the similarities and differences between the monosaccharide-aromatic interaction energies. Peracetylation of the monosaccharides substantially increases the strength of the sugar-aromatic interaction in the context of our N-glycoprotein host. Finally, we discuss our results in light of recent literature regarding the contribution of electrostatics to CH-π interactions and speculate on what our observations imply about the absolute conservation of GlcNAc as the monosaccharide through which N-linked glycans are attached to glycoproteins in eukaryotes.

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Year:  2016        PMID: 27249581      PMCID: PMC4924591          DOI: 10.1021/jacs.6b02879

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  81 in total

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Authors:  R Apweiler; H Hermjakob; N Sharon
Journal:  Biochim Biophys Acta       Date:  1999-12-06

2.  Evaluation of direct and cooperative contributions towards the strength of buried hydrogen bonds and salt bridges.

Authors:  S Albeck; R Unger; G Schreiber
Journal:  J Mol Biol       Date:  2000-05-05       Impact factor: 5.469

3.  NMR solution structure of the isolated Apo Pin1 WW domain: comparison to the x-ray crystal structures of Pin1.

Authors:  Jennifer A Kowalski; Kai Liu; Jeffery W Kelly
Journal:  Biopolymers       Date:  2002-02       Impact factor: 2.505

4.  The folding mechanism of a beta-sheet: the WW domain.

Authors:  M Jäger; H Nguyen; J C Crane; J W Kelly; M Gruebele
Journal:  J Mol Biol       Date:  2001-08-10       Impact factor: 5.469

5.  Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding.

Authors:  Andrei-J Petrescu; Adina-L Milac; Stefana M Petrescu; Raymond A Dwek; Mark R Wormald
Journal:  Glycobiology       Date:  2003-09-26       Impact factor: 4.313

Review 6.  Roles of N-linked glycans in the endoplasmic reticulum.

Authors:  Ari Helenius; Markus Aebi
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

Review 7.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition.

Authors:  Alisdair B Boraston; David N Bolam; Harry J Gilbert; Gideon J Davies
Journal:  Biochem J       Date:  2004-09-15       Impact factor: 3.857

8.  Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation.

Authors:  Houbi Nguyen; Marcus Jager; Alessandro Moretto; Martin Gruebele; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

9.  Integrating folding kinetics and protein function: biphasic kinetics and dual binding specificity in a WW domain.

Authors:  John Karanicolas; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

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  14 in total

Review 1.  Oligosaccharide Synthesis and Translational Innovation.

Authors:  Larissa Krasnova; Chi-Huey Wong
Journal:  J Am Chem Soc       Date:  2019-02-18       Impact factor: 15.419

Review 2.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

3.  Chemically Precise Glycoengineering Improves Human Insulin.

Authors:  Xiaoyang Guan; Patrick K Chaffey; Xiuli Wei; Daniel R Gulbranson; Yuan Ruan; Xinfeng Wang; Yaohao Li; Yan Ouyang; Liqun Chen; Chen Zeng; Theo N Koelsch; Amy H Tran; Wei Liang; Jingshi Shen; Zhongping Tan
Journal:  ACS Chem Biol       Date:  2017-12-01       Impact factor: 5.100

Review 4.  CH-π Interactions in Glycan Recognition.

Authors:  Laura L Kiessling; Roger C Diehl
Journal:  ACS Chem Biol       Date:  2021-10-06       Impact factor: 4.634

5.  Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities.

Authors:  Maziar S Ardejani; Evan T Powers; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2017-07-19       Impact factor: 22.384

6.  Structure and Dynamics of N-Glycosylated Human Ribonuclease 1.

Authors:  Henry R Kilgore; Andrew P Latham; Valerie T Ressler; Bin Zhang; Ronald T Raines
Journal:  Biochemistry       Date:  2020-06-30       Impact factor: 3.162

7.  Development and Evaluation of GlycanDock: A Protein-Glycoligand Docking Refinement Algorithm in Rosetta.

Authors:  Morgan L Nance; Jason W Labonte; Jared Adolf-Bryfogle; Jeffrey J Gray
Journal:  J Phys Chem B       Date:  2021-06-16       Impact factor: 2.991

8.  Stereoelectronic effects in stabilizing protein-N-glycan interactions revealed by experiment and machine learning.

Authors:  Maziar S Ardejani; Louis Noodleman; Evan T Powers; Jeffery W Kelly
Journal:  Nat Chem       Date:  2021-03-15       Impact factor: 24.427

9.  Processivity and enzymatic mechanism of a multifunctional family 5 endoglucanase from Bacillus subtilis BS-5 with potential applications in the saccharification of cellulosic substrates.

Authors:  Bin Wu; Shan Zheng; Marcelo Monteiro Pedroso; Luke W Guddat; Siyuan Chang; Bingfang He; Gerhard Schenk
Journal:  Biotechnol Biofuels       Date:  2018-01-29       Impact factor: 6.040

10.  Synthetic Carbohydrate Chemistry and Translational Medicine.

Authors:  Sachin S Shivatare; Chi-Huey Wong
Journal:  J Org Chem       Date:  2020-10-30       Impact factor: 4.354

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