Literature DB >> 15214846

Carbohydrate-binding modules: fine-tuning polysaccharide recognition.

Alisdair B Boraston1, David N Bolam, Harry J Gilbert, Gideon J Davies.   

Abstract

The enzymic degradation of insoluble polysaccharides is one of the most important reactions on earth. Despite this, glycoside hydrolases attack such polysaccharides relatively inefficiently as their target glycosidic bonds are often inaccessible to the active site of the appropriate enzymes. In order to overcome these problems, many of the glycoside hydrolases that utilize insoluble substrates are modular, comprising catalytic modules appended to one or more non-catalytic CBMs (carbohydrate-binding modules). CBMs promote the association of the enzyme with the substrate. In view of the central role that CBMs play in the enzymic hydrolysis of plant structural and storage polysaccharides, the ligand specificity displayed by these protein modules and the mechanism by which they recognize their target carbohydrates have received considerable attention since their discovery almost 20 years ago. In the last few years, CBM research has harnessed structural, functional and bioinformatic approaches to elucidate the molecular determinants that drive CBM-carbohydrate recognition. The present review summarizes the impact structural biology has had on our understanding of the mechanisms by which CBMs bind to their target ligands.

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Year:  2004        PMID: 15214846      PMCID: PMC1133952          DOI: 10.1042/BJ20040892

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  82 in total

1.  Chitin-binding proteins in invertebrates and plants comprise a common chitin-binding structural motif.

Authors:  T Suetake; S Tsuda; S Kawabata; K Miura; S Iwanaga; K Hikichi; K Nitta; K Kawano
Journal:  J Biol Chem       Date:  2000-06-16       Impact factor: 5.157

2.  Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose.

Authors:  T Giardina; A P Gunning; N Juge; C B Faulds; C S Furniss; B Svensson; V J Morris; G Williamson
Journal:  J Mol Biol       Date:  2001-11-09       Impact factor: 5.469

3.  Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysis.

Authors:  M K Ali; H Hayashi; S Karita; M Goto; T Kimura; K Sakka; K Ohmiya
Journal:  Biosci Biotechnol Biochem       Date:  2001-01       Impact factor: 2.043

4.  Glycoside hydrolase carbohydrate-binding modules as molecular probes for the analysis of plant cell wall polymers.

Authors:  Lesley McCartney; Harry J Gilbert; David N Bolam; Alisdair B Boraston; J Paul Knox
Journal:  Anal Biochem       Date:  2004-03-01       Impact factor: 3.365

5.  The binding pattern of two carbohydrate-binding modules of laminarinase Lam16A from Thermotoga neapolitana: differences in beta-glucan binding within family CBM4.

Authors:  Vladimir V Zverlov; Ilia Y Volkov; Galina A Velikodvorskaya; Wolfgang H Schwarz
Journal:  Microbiology       Date:  2001-03       Impact factor: 2.777

6.  High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding.

Authors:  Valerie Notenboom; Alisdair B Boraston; Spencer J Williams; Douglas G Kilburn; David R Rose
Journal:  Biochemistry       Date:  2002-04-02       Impact factor: 3.162

7.  C1-Cx revisited: intramolecular synergism in a cellulase.

Authors:  N Din; H G Damude; N R Gilkes; R C Miller; R A Warren; D G Kilburn
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

8.  Identification of novel beta-mannan- and beta-glucan-binding modules: evidence for a superfamily of carbohydrate-binding modules.

Authors:  A Sunna; M D Gibbs; P L Bergquist
Journal:  Biochem J       Date:  2001-06-15       Impact factor: 3.857

9.  Precise excision of the cellulose binding domains from two Cellulomonas fimi cellulases by a homologous protease and the effect on catalysis.

Authors:  N R Gilkes; R A Warren; R C Miller; D G Kilburn
Journal:  J Biol Chem       Date:  1988-07-25       Impact factor: 5.157

10.  Evidence for the extended helical nature of polysaccharide epitopes. The 2.8 A resolution structure and thermodynamics of ligand binding of an antigen binding fragment specific for alpha-(2-->8)-polysialic acid.

Authors:  S V Evans; B W Sigurskjold; H J Jennings; J R Brisson; R To; W C Tse; E Altman; M Frosch; C Weisgerber; H D Kratzin
Journal:  Biochemistry       Date:  1995-05-23       Impact factor: 3.162

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  583 in total

1.  Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module.

Authors:  Courtney B Taylor; M Faiz Talib; Clare McCabe; Lintao Bu; William S Adney; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2011-12-06       Impact factor: 5.157

2.  Localization of cell wall polysaccharides in normal and compression wood of radiata pine: relationships with lignification and microfibril orientation.

Authors:  Lloyd A Donaldson; J Paul Knox
Journal:  Plant Physiol       Date:  2011-12-05       Impact factor: 8.340

3.  D-xylose isomerase from a marine bacterium, Vibrio sp. strain XY-214, and D-xylulose production from β-1,3-xylan.

Authors:  Yoshiaki Umemoto; Toshiyuki Shibata; Toshiyoshi Araki
Journal:  Mar Biotechnol (NY)       Date:  2011-04-26       Impact factor: 3.619

4.  Phylogenetic, microbiological, and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor.

Authors:  Sara E Blumer-Schuette; Derrick L Lewis; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

5.  Structural and kinetic insights reveal that the amino acid pair Gln-228/Asn-254 modulates the transfructosylating specificity of Schwanniomyces occidentalis β-fructofuranosidase, an enzyme that produces prebiotics.

Authors:  Miguel Álvaro-Benito; M Angela Sainz-Polo; David González-Pérez; Beatriz González; Francisco J Plou; María Fernández-Lobato; Julia Sanz-Aparicio
Journal:  J Biol Chem       Date:  2012-04-16       Impact factor: 5.157

6.  Crystal structures of the laminarinase catalytic domain from Thermotoga maritima MSB8 in complex with inhibitors: essential residues for β-1,3- and β-1,4-glucan selection.

Authors:  Wen-Yih Jeng; Nai-Chen Wang; Cheng-Tse Lin; Lie-Fen Shyur; Andrew H-J Wang
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

7.  Effect of C-terminal truncation on enzyme properties of recombinant amylopullulanase from Thermoanaerobacter pseudoethanolicus.

Authors:  Fu-Pang Lin; Yi-Hsuan Ho; Hsu-Yang Lin; Hui-Ju Lin
Journal:  Extremophiles       Date:  2012-03-06       Impact factor: 2.395

8.  Structural and biochemical characterization of the salicylyl-acyltranferase SsfX3 from a tetracycline biosynthetic pathway.

Authors:  Lauren B Pickens; Michael R Sawaya; Huma Rasool; Inna Pashkov; Todd O Yeates; Yi Tang
Journal:  J Biol Chem       Date:  2011-09-29       Impact factor: 5.157

9.  Chimeric cellulase matrix for investigating intramolecular synergism between non-hydrolytic disruptive functions of carbohydrate-binding modules and catalytic hydrolysis.

Authors:  Yuguo Wang; Rentao Tang; Jin Tao; Xiaonan Wang; Baisong Zheng; Yan Feng
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

10.  Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.

Authors:  Shosuke Yoshida; Charles W Hespen; Robert L Beverly; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

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