Literature DB >> 27247413

Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium.

Mio Ohki1, Kanako Sugiyama2, Fumihiro Kawai1, Hitomi Tanaka3, Yuuki Nihei3, Satoru Unzai1, Masumi Takebe4, Shigeru Matsunaga4, Shin-Ichi Adachi5, Naoya Shibayama6, Zhiwen Zhou7, Ryuta Koyama7, Yuji Ikegaya7, Tetsuo Takahashi3, Jeremy R H Tame1, Mineo Iseki8, Sam-Yong Park9.   

Abstract

Cyclic-AMP is one of the most important second messengers, regulating many crucial cellular events in both prokaryotes and eukaryotes, and precise spatial and temporal control of cAMP levels by light shows great promise as a simple means of manipulating and studying numerous cell pathways and processes. The photoactivated adenylate cyclase (PAC) from the photosynthetic cyanobacterium Oscillatoria acuminata (OaPAC) is a small homodimer eminently suitable for this task, requiring only a simple flavin chromophore within a blue light using flavin (BLUF) domain. These domains, one of the most studied types of biological photoreceptor, respond to blue light and either regulate the activity of an attached enzyme domain or change its affinity for a repressor protein. BLUF domains were discovered through studies of photo-induced movements of Euglena gracilis, a unicellular flagellate, and gene expression in the purple bacterium Rhodobacter sphaeroides, but the precise details of light activation remain unknown. Here, we describe crystal structures and the light regulation mechanism of the previously undescribed OaPAC, showing a central coiled coil transmits changes from the light-sensing domains to the active sites with minimal structural rearrangement. Site-directed mutants show residues essential for signal transduction over 45 Å across the protein. The use of the protein in living human cells is demonstrated with cAMP-dependent luciferase, showing a rapid and stable response to light over many hours and activation cycles. The structures determined in this study will assist future efforts to create artificial light-regulated control modules as part of a general optogenetic toolkit.

Entities:  

Keywords:  X-ray crystallography; allostery; blue light; optogenetics

Mesh:

Substances:

Year:  2016        PMID: 27247413      PMCID: PMC4914150          DOI: 10.1073/pnas.1517520113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Comparative simulations of the ground state and the M-intermediate state of the sensory rhodopsin II-transducer complex with a HAMP domain model.

Authors:  Koro Nishikata; Mitsunori Ikeguchi; Akinori Kidera
Journal:  Biochemistry       Date:  2012-07-16       Impact factor: 3.162

2.  Dynamic allostery of protein alpha helical coiled-coils.

Authors:  Rhoda J Hawkins; Tom C B McLeish
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

3.  Fast manipulation of cellular cAMP level by light in vivo.

Authors:  Saskia Schröder-Lang; Martin Schwärzel; Reinhard Seifert; Timo Strünker; Suneel Kateriya; Jens Looser; Masakatsu Watanabe; U Benjamin Kaupp; Peter Hegemann; Georg Nagel
Journal:  Nat Methods       Date:  2006-11-26       Impact factor: 28.547

4.  Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.

Authors:  Rouslan Moukhametzianov; Johann P Klare; Rouslan Efremov; Christian Baeken; Annika Göppner; Jörg Labahn; Martin Engelhard; Georg Büldt; Valentin I Gordeliy
Journal:  Nature       Date:  2006-02-01       Impact factor: 49.962

5.  Three strategically placed hydrogen-bonding residues convert a proton pump into a sensory receptor.

Authors:  Yuki Sudo; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

6.  Bicarbonate activation of adenylyl cyclase via promotion of catalytic active site closure and metal recruitment.

Authors:  Clemens Steegborn; Tatiana N Litvin; Lonny R Levin; Jochen Buck; Hao Wu
Journal:  Nat Struct Mol Biol       Date:  2004-12-26       Impact factor: 15.369

7.  Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides.

Authors:  Spencer Anderson; Vladimira Dragnea; Shinji Masuda; Joel Ybe; Keith Moffat; Carl Bauer
Journal:  Biochemistry       Date:  2005-06-07       Impact factor: 3.162

8.  Nucleotide sequence and characterization of the sfs1 gene: sfs1 is involved in CRP*-dependent mal gene expression in Escherichia coli.

Authors:  M Kawamukai; R Utsumi; K Takeda; A Higashi; H Matsuda; Y L Choi; T Komano
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

9.  Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain.

Authors:  Akiko Kita; Koji Okajima; Yukio Morimoto; Masahiko Ikeuchi; Kunio Miki
Journal:  J Mol Biol       Date:  2005-04-09       Impact factor: 5.469

10.  Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Authors:  Thomas R M Barends; Elisabeth Hartmann; Julia J Griese; Thorsten Beitlich; Natalia V Kirienko; Dmitri A Ryjenkov; Jochen Reinstein; Robert L Shoeman; Mark Gomelsky; Ilme Schlichting
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

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  26 in total

1.  Photoreaction Mechanisms of Flavoprotein Photoreceptors and Their Applications.

Authors:  Tatsuya Iwata; Shinji Masuda
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  Molecular mechanism of photoactivation of a light-regulated adenylate cyclase.

Authors:  Mio Ohki; Ayana Sato-Tomita; Shigeru Matsunaga; Mineo Iseki; Jeremy R H Tame; Naoya Shibayama; Sam-Yong Park
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

Review 3.  Optogenetic approaches for dissecting neuromodulation and GPCR signaling in neural circuits.

Authors:  Skylar M Spangler; Michael R Bruchas
Journal:  Curr Opin Pharmacol       Date:  2016-11-19       Impact factor: 5.547

4.  Compartmentalized cAMP Generation by Engineered Photoactivated Adenylyl Cyclases.

Authors:  Colin P O'Banion; Brianna M Vickerman; Lauren Haar; David S Lawrence
Journal:  Cell Chem Biol       Date:  2019-07-25       Impact factor: 8.116

Review 5.  Blue-Light Receptors for Optogenetics.

Authors:  Aba Losi; Kevin H Gardner; Andreas Möglich
Journal:  Chem Rev       Date:  2018-07-09       Impact factor: 60.622

6.  Molecular Properties and Optogenetic Applications of Enzymerhodopsins.

Authors:  Satoshi P Tsunoda; Masahiro Sugiura; Hideki Kandori
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

7.  Photoactivated Adenylyl Cyclases: Fundamental Properties and Applications.

Authors:  Mineo Iseki; Sam-Yong Park
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 8.  Optophysiology: Illuminating cell physiology with optogenetics.

Authors:  Peng Tan; Lian He; Yun Huang; Yubin Zhou
Journal:  Physiol Rev       Date:  2022-01-24       Impact factor: 37.312

Review 9.  Seeing the light with BLUF proteins.

Authors:  Sam-Yong Park; Jeremy R H Tame
Journal:  Biophys Rev       Date:  2017-03-24

10.  Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells.

Authors:  Matthew Blain-Hartung; Nathan C Rockwell; Marcus V Moreno; Shelley S Martin; Fei Gan; Donald A Bryant; J Clark Lagarias
Journal:  J Biol Chem       Date:  2018-04-09       Impact factor: 5.157

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