Literature DB >> 31763499

Genomic Tools for Environmental Epigenetics and Implications for Public Health.

Bambarendage P U Perera1, Laurie Svoboda1, Dana C Dolinoy1,2.   

Abstract

Epigenetics refers to the study of mitotically heritable and potentially reversible changes in gene expression unrelated to the DNA sequence itself, influenced by epigenetic marks including chromatin modifications, non-coding RNA and alterations to DNA itself via methylation and hydroxymethylation. Epigenetics has taken center stage in the study of diseases such as cancer, diabetes, and neurodegeneration; however, its integration into the field of environmental health sciences and toxicology (e.g. Toxicoepigenetics) is in its infancy. This review highlights the need to evaluate surrogate and target tissues in the field of toxicoepigenetics as the National Institute of Environmental Health Sciences (NIEHS) multi-phased Toxicant Exposure and Response by Genomic and Epigenomic Regulators of Transcription (TaRGET) consortia make headway, and the emergence of non-coding RNA biomarkers. The review also discusses lead (Pb) as a potential toxicoepigenetic exposure, where pre- and post-natal Pb exposure is associated with reprogramming of DNA methylation, histone modifications, and microRNA expression, representing potential biomarkers or predictors for Pb-induced health outcomes. Finally, new advances in epigenome editing, highlighting the potential of small ncRNA, will be explored for environmental health sciences research.

Entities:  

Keywords:  DNA methylation; Toxicoepigenetics; circRNA; lead (Pb); non-coding RNA; piRNA

Year:  2019        PMID: 31763499      PMCID: PMC6874218          DOI: 10.1016/j.cotox.2019.02.008

Source DB:  PubMed          Journal:  Curr Opin Toxicol        ISSN: 2468-2020


  62 in total

1.  In utero arsenic exposure and epigenome-wide associations in placenta, umbilical artery, and human umbilical vein endothelial cells.

Authors:  Andres Cardenas; E Andres Houseman; Andrea A Baccarelli; Quazi Quamruzzaman; Mahmuder Rahman; Golam Mostofa; Robert O Wright; David C Christiani; Molly L Kile
Journal:  Epigenetics       Date:  2015       Impact factor: 4.528

2.  Sex- and brain region- specific effects of prenatal stress and lead exposure on permissive and repressive post-translational histone modifications from embryonic development through adulthood.

Authors:  G Varma; M Sobolewski; D A Cory-Slechta; J S Schneider
Journal:  Neurotoxicology       Date:  2017-07-13       Impact factor: 4.294

3.  The human circulating miRNome reflects multiple organ disease risks in association with short-term exposure to traffic-related air pollution.

Authors:  Julian Krauskopf; Florian Caiment; Karin van Veldhoven; Marc Chadeau-Hyam; Rudy Sinharay; Kian Fan Chung; Paul Cullinan; Peter Collins; Benjamin Barratt; Frank J Kelly; Roel Vermeulen; Paolo Vineis; Theo M de Kok; Jos C Kleinjans
Journal:  Environ Int       Date:  2018-01-28       Impact factor: 9.621

4.  The NIEHS TaRGET II Consortium and environmental epigenomics.

Authors:  Ting Wang; Erica C Pehrsson; Deepak Purushotham; Daofeng Li; Xiaoyu Zhuo; Bo Zhang; Heather A Lawson; Michael A Province; Christopher Krapp; Yemin Lan; Cristian Coarfa; Tiffany A Katz; Wan Yee Tang; Zhibin Wang; Shyam Biswal; Sanjay Rajagopalan; Justin A Colacino; Zing Tsung-Yeh Tsai; Maureen A Sartor; Kari Neier; Dana C Dolinoy; Jayant Pinto; Robert B Hamanaka; Gokhan M Mutlu; Heather B Patisaul; David L Aylor; Gregory E Crawford; Tim Wiltshire; Lisa H Chadwick; Christopher G Duncan; Amanda E Garton; Kimberly A McAllister; Marisa S Bartolomei; Cheryl L Walker; Frederick L Tyson
Journal:  Nat Biotechnol       Date:  2018-03-06       Impact factor: 54.908

Review 5.  Untangling the web: the diverse functions of the PIWI/piRNA pathway.

Authors:  Sneha Ramesh Mani; Celina E Juliano
Journal:  Mol Reprod Dev       Date:  2013-06-27       Impact factor: 2.609

Review 6.  Epigenetics in human disease and prospects for epigenetic therapy.

Authors:  Gerda Egger; Gangning Liang; Ana Aparicio; Peter A Jones
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

7.  Correspondence of DNA Methylation Between Blood and Brain Tissue and Its Application to Schizophrenia Research.

Authors:  Esther Walton; Johanna Hass; Jingyu Liu; Joshua L Roffman; Fabio Bernardoni; Veit Roessner; Matthias Kirsch; Gabriele Schackert; Vince Calhoun; Stefan Ehrlich
Journal:  Schizophr Bull       Date:  2015-06-08       Impact factor: 9.306

8.  Cigarette smoke exposure-associated alterations to non-coding RNA.

Authors:  Matthew A Maccani; Valerie S Knopik
Journal:  Front Genet       Date:  2012-04-09       Impact factor: 4.599

9.  Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes.

Authors:  Dan Su; Xuting Wang; Michelle R Campbell; Devin K Porter; Gary S Pittman; Brian D Bennett; Ma Wan; Neal A Englert; Christopher L Crowl; Ryan N Gimple; Kelly N Adamski; Zhiqing Huang; Susan K Murphy; Douglas A Bell
Journal:  PLoS One       Date:  2016-12-09       Impact factor: 3.240

Review 10.  The emerging landscape of circular RNA in life processes.

Authors:  Shibin Qu; Yue Zhong; Runze Shang; Xuan Zhang; Wenjie Song; Jørgen Kjems; Haimin Li
Journal:  RNA Biol       Date:  2016-08-11       Impact factor: 4.652

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  3 in total

Review 1.  Gene-environment interactions in Alzheimer disease: the emerging role of epigenetics.

Authors:  Lucia Migliore; Fabio Coppedè
Journal:  Nat Rev Neurol       Date:  2022-09-30       Impact factor: 44.711

2.  Perinatal DEHP exposure induces sex- and tissue-specific DNA methylation changes in both juvenile and adult mice.

Authors:  Siyu Liu; Kai Wang; Laurie K Svoboda; Christine A Rygiel; Kari Neier; Tamara R Jones; Raymond G Cavalcante; Justin A Colacino; Dana C Dolinoy; Maureen A Sartor
Journal:  Environ Epigenet       Date:  2021-05-10

Review 3.  The position of geochemical variables as causal co-factors of diseases of unknown aetiology.

Authors:  Theophilus C Davies
Journal:  SN Appl Sci       Date:  2022-07-27
  3 in total

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