Literature DB >> 27240357

Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms.

Oscar Martínez-Santiago1,2, Yovani Marrero-Ponce3,4,5,6, Stephen J Barigye7,8, Huong Le Thi Thu9, F Javier Torres10,11, Cesar H Zambrano12,13, Jorge L Muñiz Olite14, Maykel Cruz-Monteagudo15, Ricardo Vivas-Reyes16,17, Liliana Vázquez Infante18,19, Luis M Artiles Martínez20.   

Abstract

This report examines the interpretation of the Graph Derivative Indices (GDIs) from three different perspectives (i.e., in structural, steric and electronic terms). It is found that the individual vertex frequencies may be expressed in terms of the geometrical and electronic reactivity of the atoms and bonds, respectively. On the other hand, it is demonstrated that the GDIs are sensitive to progressive structural modifications in terms of: size, ramifications, electronic richness, conjugation effects and molecular symmetry. Moreover, it is observed that the GDIs quantify the interaction capacity among molecules and codify information on the activation entropy. A structure property relationship study reveals that there exists a direct correspondence between the individual frequencies of atoms and Hückel's Free Valence, as well as between the atomic GDIs and the chemical shift in NMR, which collectively validates the theory that these indices codify steric and electronic information of the atoms in a molecule. Taking in consideration the regularity and coherence found in experiments performed with the GDIs, it is possible to say that GDIs possess plausible interpretation in structural and physicochemical terms.

Entities:  

Keywords:  17O-RMN; GDIs; activation entropy; derivative indices; discrete derivative; free valence; reactivity; resonance energy; structural interpretation

Mesh:

Substances:

Year:  2016        PMID: 27240357      PMCID: PMC4926346          DOI: 10.3390/ijms17060812

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  11 in total

1.  Intermolecular accessibility: the meaning of molecular connectivity

Authors: 
Journal:  J Chem Inf Comput Sci       Date:  2000-05

2.  3D connectivity indices in QSPR/QSAR studies.

Authors:  E Estrada; E Molina
Journal:  J Chem Inf Comput Sci       Date:  2001 May-Jun

Review 3.  Novel local (fragment-based) topological molecular descriptors for QSpr/QSAR and molecular design.

Authors:  E Estrada; E Molina
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

Review 4.  Molecular connectivity: intermolecular accessibility and encounter simulation.

Authors:  L B Kier; L H Hall
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

5.  Relations frequency hypermatrices in mutual, conditional and joint entropy-based information indices.

Authors:  Stephen J Barigye; Yovani Marrero-Ponce; Yoan Martínez-López; Francisco Torrens; Luis Manuel Artiles-Martínez; Ricardo W Pino-Urias; Oscar Martínez-Santiago
Journal:  J Comput Chem       Date:  2012-09-26       Impact factor: 3.376

6.  Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application.

Authors:  Yovani Marrero-Ponce; Oscar Martínez Santiago; Yoan Martínez López; Stephen J Barigye; Francisco Torrens
Journal:  J Comput Aided Mol Des       Date:  2012-11-04       Impact factor: 3.686

7.  Event-based criteria in GT-STAF information indices: theory, exploratory diversity analysis and QSPR applications.

Authors:  S J Barigye; Y Marrero-Ponce; Y Martínez López; O Martínez Santiago; F Torrens; R García Domenech; J Galvez
Journal:  SAR QSAR Environ Res       Date:  2012-10-16       Impact factor: 3.000

8.  QuBiLS-MIDAS: a parallel free-software for molecular descriptors computation based on multilinear algebraic maps.

Authors:  César R García-Jacas; Yovani Marrero-Ponce; Liesner Acevedo-Martínez; Stephen J Barigye; José R Valdés-Martiní; Ernesto Contreras-Torres
Journal:  J Comput Chem       Date:  2014-06-02       Impact factor: 3.376

9.  N-linear algebraic maps for chemical structure codification: a suitable generalization for atom-pair approaches?

Authors:  Cesar R Garcia-Jacas; Yovani Marrero-Ponce; Stephen J Barigye; Jose R Valdes-Martini; Oscar M Rivera-Borroto; Jesus Olivero-Verbel
Journal:  Curr Drug Metab       Date:  2014       Impact factor: 3.731

10.  Compactness aromaticity of atoms in molecules.

Authors:  Mihai V Putz
Journal:  Int J Mol Sci       Date:  2010-03-26       Impact factor: 5.923

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  1 in total

1.  Data Analysis in Chemistry and Bio-Medical Sciences.

Authors:  Roberto Todeschini; Alejandro Pazos; Sonia Arrasate; Humberto González-Díaz
Journal:  Int J Mol Sci       Date:  2016-12-14       Impact factor: 5.923

  1 in total

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