Literature DB >> 11760003

Novel local (fragment-based) topological molecular descriptors for QSpr/QSAR and molecular design.

E Estrada1, E Molina.   

Abstract

Novel molecular descriptors based on local spectral moments of the bond matrix are defined. Mathematical expressions relating bond moments to linear combinations of structural fragments are derived. The novel descriptors are used to describe boiling points of alcohols producing a good QSPR model accounting for more than 98% of variance. A quantitative structure-reactivity model is obtained to predict the specific rate constant (log k) of the nucleophilic addition of mercaptoacetic acid to 2-furylethylene derivatives. The model accounts for more than 96% of the variance in log k. Two other models were also obtained by using molecular connectivity indices and total spectral moments of the bond matrix that account for <84% of the variance in this reactivity index. A model based on quantum chemical descriptors accounts for the same variance than that obtained with bond moments. The model based on local moments permitted to compute the contribution of different structural fragments to the reactivity, and a good relationship (r = 0.98) was obtained with these group contributions with Hammett sigma(p) constants for 21 groups.

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Year:  2001        PMID: 11760003     DOI: 10.1016/s1093-3263(01)00100-0

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  14 in total

1.  Creating molecular diversity from antioxidants in Brazilian propolis. Combination of TOPS-MODE QSAR and virtual structure generation.

Authors:  Ernesto Estrada; Jose A Quincoces; Grace Patlewicz
Journal:  Mol Divers       Date:  2004       Impact factor: 2.943

2.  Bond-based global and local (bond, group and bond-type) quadratic indices and their applications to computer-aided molecular design. 1. QSPR studies of diverse sets of organic chemicals.

Authors:  Yovani Marrero-Ponce; Francisco Torrens; Ysaias J Alvarado; Richard Rotondo
Journal:  J Comput Aided Mol Des       Date:  2006-11-25       Impact factor: 3.686

3.  Bond-based 2D TOMOCOMD-CARDD approach for drug discovery: aiding decision-making in 'in silico' selection of new lead tyrosinase inhibitors.

Authors:  Yovani Marrero-Ponce; Mahmud Tareq Hassan Khan; Gerardo M Casañola-Martín; Arjumand Ather; Mukhlis N Sultankhodzhaev; Ramón García-Domenech; Francisco Torrens; Richard Rotondo
Journal:  J Comput Aided Mol Des       Date:  2007-02-28       Impact factor: 3.686

4.  Design of novel antituberculosis compounds using graph-theoretical and substructural approaches.

Authors:  Alejandro Speck Planche; Marcus Tulius Scotti; América García López; Vicente de Paulo Emerenciano; Enrique Molina Pérez; Eugenio Uriarte
Journal:  Mol Divers       Date:  2009-04-02       Impact factor: 2.943

5.  Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application.

Authors:  Yovani Marrero-Ponce; Oscar Martínez Santiago; Yoan Martínez López; Stephen J Barigye; Francisco Torrens
Journal:  J Comput Aided Mol Des       Date:  2012-11-04       Impact factor: 3.686

6.  Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms.

Authors:  Oscar Martínez-Santiago; Yovani Marrero-Ponce; Stephen J Barigye; Huong Le Thi Thu; F Javier Torres; Cesar H Zambrano; Jorge L Muñiz Olite; Maykel Cruz-Monteagudo; Ricardo Vivas-Reyes; Liliana Vázquez Infante; Luis M Artiles Martínez
Journal:  Int J Mol Sci       Date:  2016-05-27       Impact factor: 5.923

7.  In Silico Antiprotozoal Evaluation of 1,4-Naphthoquinone Derivatives against Chagas and Leishmaniasis Diseases Using QSAR, Molecular Docking, and ADME Approaches.

Authors:  Lina S Prieto Cárdenas; Karen A Arias Soler; Diana L Nossa González; Wilson E Rozo Núñez; Agobardo Cárdenas-Chaparro; Pablo R Duchowicz; Jovanny A Gómez Castaño
Journal:  Pharmaceuticals (Basel)       Date:  2022-05-31

8.  Atom, atom-type, and total linear indices of the "molecular pseudograph's atom adjacency matrix": application to QSPR/QSAR studies of organic compounds.

Authors:  Yovani Marrero Ponce; Juan Alberto Castillo Garit; Francisco Torrens; Vicente Romero Zaldivar; Eduardo A Castro
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

9.  Bond-based linear indices in QSAR: computational discovery of novel anti-trichomonal compounds.

Authors:  Yovani Marrero-Ponce; Alfredo Meneses-Marcel; Oscar M Rivera-Borroto; Ramón García-Domenech; Jesus Vicente De Julián-Ortiz; Alina Montero; José Antonio Escario; Alicia Gómez Barrio; David Montero Pereira; Juan José Nogal; Ricardo Grau; Francisco Torrens; Christian Vogel; Vicente J Arán
Journal:  J Comput Aided Mol Des       Date:  2008-05-16       Impact factor: 3.686

10.  Bond-based linear indices of the non-stochastic and stochastic edge-adjacency matrix. 1. Theory and modeling of ChemPhys properties of organic molecules.

Authors:  Yovani Marrero-Ponce; Eugenio R Martínez-Albelo; Gerardo M Casañola-Martín; Juan A Castillo-Garit; Yunaimy Echevería-Díaz; Vicente Romero Zaldivar; Jan Tygat; José E Rodriguez Borges; Ramón García-Domenech; Francisco Torrens; Facundo Pérez-Giménez
Journal:  Mol Divers       Date:  2010-01-10       Impact factor: 2.943

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