Literature DB >> 23066866

Event-based criteria in GT-STAF information indices: theory, exploratory diversity analysis and QSPR applications.

S J Barigye1, Y Marrero-Ponce, Y Martínez López, O Martínez Santiago, F Torrens, R García Domenech, J Galvez.   

Abstract

Versatile event-based approaches for the definition of novel information theory-based indices (IFIs) are presented. An event in this context is the criterion followed in the "discovery" of molecular substructures, which in turn serve as basis for the construction of the generalized incidence and relations frequency matrices, Q and F, respectively. From the resultant F, Shannon's, mutual, conditional and joint entropy-based IFIs are computed. In previous reports, an event named connected subgraphs was presented. The present study is an extension of this notion, in which we introduce other events, namely: terminal paths, vertex path incidence, quantum subgraphs, walks of length k, Sach's subgraphs, MACCs, E-state and substructure fingerprints and, finally, Ghose and Crippen atom-types for hydrophobicity and refractivity. Moreover, we define magnitude-based IFIs, introducing the use of the magnitude criterion in the definition of mutual, conditional and joint entropy-based IFIs. We also discuss the use of information-theoretic parameters as a measure of the dissimilarity of codified structural information of molecules. Finally, a comparison of the statistics for QSPR models obtained with the proposed IFIs and DRAGON's molecular descriptors for two physicochemical properties log P and log K of 34 derivatives of 2-furylethylenes demonstrates similar to better predictive ability than the latter.

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Year:  2012        PMID: 23066866     DOI: 10.1080/1062936X.2012.728994

Source DB:  PubMed          Journal:  SAR QSAR Environ Res        ISSN: 1026-776X            Impact factor:   3.000


  3 in total

1.  Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms.

Authors:  Oscar Martínez-Santiago; Yovani Marrero-Ponce; Stephen J Barigye; Huong Le Thi Thu; F Javier Torres; Cesar H Zambrano; Jorge L Muñiz Olite; Maykel Cruz-Monteagudo; Ricardo Vivas-Reyes; Liliana Vázquez Infante; Luis M Artiles Martínez
Journal:  Int J Mol Sci       Date:  2016-05-27       Impact factor: 5.923

Review 2.  Trends in information theory-based chemical structure codification.

Authors:  Stephen J Barigye; Yovani Marrero-Ponce; Facundo Pérez-Giménez; Danail Bonchev
Journal:  Mol Divers       Date:  2014-04-05       Impact factor: 2.943

3.  Undersampling: case studies of flaviviral inhibitory activities.

Authors:  Stephen J Barigye; José Manuel García de la Vega; Juan A Castillo-Garit
Journal:  J Comput Aided Mol Des       Date:  2019-11-26       Impact factor: 3.686

  3 in total

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