Literature DB >> 11410059

3D connectivity indices in QSPR/QSAR studies.

E Estrada1, E Molina.   

Abstract

Topographic (3D) molecular connectivity indices based on molecular graphs weighted with quantum chemical parameters are used in QSPR and QSAR studies. These descriptors were compared to 2D connectivity indices (vertex and edge ones) and to quantum chemical descriptors in modeling partition coefficient (log P) and antibacterial activity of 2-furylethylene derivatives. In describing log P the 3D connectivity indices produced a significant improvement (more than 29%) in the predictive capacity of the model compared to those derived with topological and quantum chemical descriptors. The best linear discriminant model for classifying antibacterial activity of these compounds was also obtained with the use of 3D connectivity indices. The global percent of good classification obtained with 3D and 2D connectivity as well as quantum chemical descriptors were 94.1, 91.2, and 88.2, respectively. In general, all these models predict correctly the antibacterial activity of a set of nine new 2-furylethylene derivatives. The best result is obtained with 3D connectivity indices that classified correctly 100% of these compounds versus 88.9% obtained with 2D connectivity or quantum chemical descriptors.

Entities:  

Year:  2001        PMID: 11410059     DOI: 10.1021/ci000156i

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  9 in total

1.  Predicting infinite dilution activity coefficients of organic compounds in water by quantum-connectivity descriptors.

Authors:  Ernesto Estrada; Gerardo A Díaz; Eduardo J Delgado
Journal:  J Comput Aided Mol Des       Date:  2006-10-19       Impact factor: 3.686

2.  Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application.

Authors:  Yovani Marrero-Ponce; Oscar Martínez Santiago; Yoan Martínez López; Stephen J Barigye; Francisco Torrens
Journal:  J Comput Aided Mol Des       Date:  2012-11-04       Impact factor: 3.686

3.  Physico-Chemical and Structural Interpretation of Discrete Derivative Indices on N-Tuples Atoms.

Authors:  Oscar Martínez-Santiago; Yovani Marrero-Ponce; Stephen J Barigye; Huong Le Thi Thu; F Javier Torres; Cesar H Zambrano; Jorge L Muñiz Olite; Maykel Cruz-Monteagudo; Ricardo Vivas-Reyes; Liliana Vázquez Infante; Luis M Artiles Martínez
Journal:  Int J Mol Sci       Date:  2016-05-27       Impact factor: 5.923

4.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

5.  Atom, atom-type, and total linear indices of the "molecular pseudograph's atom adjacency matrix": application to QSPR/QSAR studies of organic compounds.

Authors:  Yovani Marrero Ponce; Juan Alberto Castillo Garit; Francisco Torrens; Vicente Romero Zaldivar; Eduardo A Castro
Journal:  Molecules       Date:  2004-12-31       Impact factor: 4.411

6.  Markovian chemicals "in silico" design (MARCH-INSIDE), a promising approach for computer-aided molecular design I: discovery of anticancer compounds.

Authors:  Humberto Gonzáles-Díaz; Ornella Gia; Eugenio Uriarte; Ivan Hernádez; Ronal Ramos; Mayrelis Chaviano; Santiago Seijo; Juan A Castillo; Lázaro Morales; Lourdes Santana; Delali Akpaloo; Enrique Molina; Maikel Cruz; Luis A Torres; Miguel A Cabrera
Journal:  J Mol Model       Date:  2003-09-16       Impact factor: 1.810

7.  Bond-based linear indices of the non-stochastic and stochastic edge-adjacency matrix. 1. Theory and modeling of ChemPhys properties of organic molecules.

Authors:  Yovani Marrero-Ponce; Eugenio R Martínez-Albelo; Gerardo M Casañola-Martín; Juan A Castillo-Garit; Yunaimy Echevería-Díaz; Vicente Romero Zaldivar; Jan Tygat; José E Rodriguez Borges; Ramón García-Domenech; Francisco Torrens; Facundo Pérez-Giménez
Journal:  Mol Divers       Date:  2010-01-10       Impact factor: 2.943

8.  Scoring function for DNA-drug docking of anticancer and antiparasitic compounds based on spectral moments of 2D lattice graphs for molecular dynamics trajectories.

Authors:  Lázaro G Pérez-Montoto; Lourdes Santana; Humberto González-Díaz
Journal:  Eur J Med Chem       Date:  2009-06-17       Impact factor: 6.514

9.  Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices.

Authors:  Cristian Robert Munteanu; Alexandre L Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-12-06       Impact factor: 2.691

  9 in total

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