Literature DB >> 27215816

Molecular Shape and the Hydrophobic Effect.

Matthew B Hillyer1, Bruce C Gibb1.   

Abstract

This review focuses on papers published since 2000 on the topic of the properties of solutes in water. More specifically, it evaluates the state of the art of our understanding of the complex relationship between the shape of a hydrophobe and the hydrophobic effect. To highlight this, we present a selection of references covering both empirical and molecular dynamics studies of small (molecular-scale) solutes. These include empirical studies of small molecules, synthetic hosts, crystalline monolayers, and proteins, as well as in silico investigations of entities such as idealized hard and soft spheres, small solutes, hydrophobic plates, artificial concavity, molecular hosts, carbon nanotubes and spheres, and proteins.

Entities:  

Keywords:  hydration; hydrophobic effect; noncovalent interactions; supramolecular chemistry; water

Mesh:

Substances:

Year:  2016        PMID: 27215816      PMCID: PMC5571648          DOI: 10.1146/annurev-physchem-040215-112316

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  117 in total

Review 1.  Hofmeister phenomena: an update on ion specificity in biology.

Authors:  Pierandrea Lo Nostro; Barry W Ninham
Journal:  Chem Rev       Date:  2012-01-17       Impact factor: 60.622

2.  High-resolution in situ x-ray study of the hydrophobic gap at the water-octadecyl-trichlorosilane interface.

Authors:  Markus Mezger; Harald Reichert; Sebastian Schöder; John Okasinski; Heiko Schröder; Helmut Dosch; Dennis Palms; John Ralston; Veijo Honkimäki
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

3.  Effect of pressure on the phase behavior and structure of water confined between nanoscale hydrophobic and hydrophilic plates.

Authors:  Nicolas Giovambattista; Peter J Rossky; Pablo G Debenedetti
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-13

4.  Observation of water dangling OH bonds around dissolved nonpolar groups.

Authors:  P N Perera; K R Fega; C Lawrence; E J Sundstrom; J Tomlinson-Phillips; Dor Ben-Amotz
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-20       Impact factor: 11.205

5.  Free energy barriers to evaporation of water in hydrophobic confinement.

Authors:  Sumit Sharma; Pablo G Debenedetti
Journal:  J Phys Chem B       Date:  2012-10-30       Impact factor: 2.991

6.  Thermodynamics of protein association reactions: forces contributing to stability.

Authors:  P D Ross; S Subramanian
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

7.  The hydrophobic effect: molecular dynamics simulations of water confined between extended hydrophobic and hydrophilic surfaces.

Authors:  Morten Ø Jensen; Ole G Mouritsen; Günther H Peters
Journal:  J Chem Phys       Date:  2004-05-22       Impact factor: 3.488

8.  Water in the half shell: structure of water, focusing on angular structure and solvation.

Authors:  Kim A Sharp; Jane M Vanderkooi
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

9.  Size-dependent water structures in carbon nanotubes.

Authors:  Tomonori Ohba
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-04       Impact factor: 15.336

10.  Water structural transformation at molecular hydrophobic interfaces.

Authors:  Joel G Davis; Kamil P Gierszal; Ping Wang; Dor Ben-Amotz
Journal:  Nature       Date:  2012-11-22       Impact factor: 49.962

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  15 in total

Review 1.  The aqueous supramolecular chemistry of cucurbit[n]urils, pillar[n]arenes and deep-cavity cavitands.

Authors:  James Murray; Kimoon Kim; Tomoki Ogoshi; Wei Yao; Bruce C Gibb
Journal:  Chem Soc Rev       Date:  2017-05-09       Impact factor: 54.564

2.  The road to aryl CHanion binding was paved with good intentions: fundamental studies, host design, and historical perspectives in CH hydrogen bonding.

Authors:  Lisa M Eytel; Hazel A Fargher; Michael M Haley; Darren W Johnson
Journal:  Chem Commun (Camb)       Date:  2019-04-04       Impact factor: 6.222

3.  Hydrophobicity of proteins and nanostructured solutes is governed by topographical and chemical context.

Authors:  Erte Xi; Vasudevan Venkateshwaran; Lijuan Li; Nicholas Rego; Amish J Patel; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-20       Impact factor: 11.205

Review 4.  Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry.

Authors:  Paul S Cremer; Amar H Flood; Bruce C Gibb; David L Mobley
Journal:  Nat Chem       Date:  2017-12-19       Impact factor: 24.427

5.  Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.

Authors:  Fengbin Wang; Virginija Cvirkaite-Krupovic; Matthijn Vos; Leticia C Beltran; Mark A B Kreutzberger; Jean-Marie Winter; Zhangli Su; Jun Liu; Stefan Schouten; Mart Krupovic; Edward H Egelman
Journal:  Cell       Date:  2022-03-23       Impact factor: 66.850

6.  How Water's Properties Are Encoded in Its Molecular Structure and Energies.

Authors:  Emiliano Brini; Christopher J Fennell; Marivi Fernandez-Serra; Barbara Hribar-Lee; Miha Lukšič; Ken A Dill
Journal:  Chem Rev       Date:  2017-09-26       Impact factor: 60.622

7.  Molecular Insights into the Membrane Affinities of Model Hydrophobes.

Authors:  Jianguo Li; Roger W Beuerman; Chandra S Verma
Journal:  ACS Omega       Date:  2018-03-01

8.  Cavitand Complexes in Aqueous Solution: Collaborative Experimental and Computational Studies of the Wetting, Assembly, and Function of Nanoscopic Bowls in Water.

Authors:  Henry S Ashbaugh; Bruce C Gibb; Paolo Suating
Journal:  J Phys Chem B       Date:  2021-03-02       Impact factor: 2.991

9.  Directed self-assembly of fluorescence responsive nanoparticles and their use for real-time surface and cellular imaging.

Authors:  Shane Cheung; Donal F O'Shea
Journal:  Nat Commun       Date:  2017-12-01       Impact factor: 14.919

10.  Proximal charge effects on guest binding to a non-polar pocket.

Authors:  Paolo Suating; Thong T Nguyen; Nicholas E Ernst; Yang Wang; Jacobs H Jordan; Corinne L D Gibb; Henry S Ashbaugh; Bruce C Gibb
Journal:  Chem Sci       Date:  2020-03-17       Impact factor: 9.825

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