Literature DB >> 35325592

Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.

Fengbin Wang1, Virginija Cvirkaite-Krupovic2, Matthijn Vos3, Leticia C Beltran1, Mark A B Kreutzberger1, Jean-Marie Winter3, Zhangli Su1, Jun Liu4, Stefan Schouten5, Mart Krupovic6, Edward H Egelman7.   

Abstract

Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.
Copyright © 2022 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  capsids; cryo-EM; extremeophiles; helical polymers; viral evolution

Mesh:

Substances:

Year:  2022        PMID: 35325592      PMCID: PMC9018610          DOI: 10.1016/j.cell.2022.02.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  75 in total

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Authors:  Felicitas Pfeifer; Dagmar Gregor; Annette Hofacker; Petra Plösser; Peter Zimmermann
Journal:  J Mol Microbiol Biotechnol       Date:  2002-05

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

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Review 4.  Life in acid: pH homeostasis in acidophiles.

Authors:  Craig Baker-Austin; Mark Dopson
Journal:  Trends Microbiol       Date:  2007-02-28       Impact factor: 17.079

5.  Unification of the globally distributed spindle-shaped viruses of the Archaea.

Authors:  Mart Krupovic; Emmanuelle R J Quemin; Dennis H Bamford; Patrick Forterre; David Prangishvili
Journal:  J Virol       Date:  2013-12-11       Impact factor: 5.103

6.  Chemical deglycosylation of glycoproteins.

Authors:  H T Sojar; O P Bahl
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

7.  Virus-induced cell gigantism and asymmetric cell division in archaea.

Authors:  Junfeng Liu; Virginija Cvirkaite-Krupovic; Diana P Baquero; Yunfeng Yang; Qi Zhang; Yulong Shen; Mart Krupovic
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-13       Impact factor: 11.205

8.  Useful scars: Physics of the capsids of archaeal viruses.

Authors:  L E Perotti; S Dharmavaram; W S Klug; J Marian; J Rudnick; R F Bruinsma
Journal:  Phys Rev E       Date:  2016-07-11       Impact factor: 2.529

9.  Gas vesicle genes identified in Bacillus megaterium and functional expression in Escherichia coli.

Authors:  N Li; M C Cannon
Journal:  J Bacteriol       Date:  1998-05       Impact factor: 3.490

10.  DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes.

Authors:  Jonas Pfab; Nhut Minh Phan; Dong Si
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

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  2 in total

1.  DeepTracer-ID: De novo protein identification from cryo-EM maps.

Authors:  Luca Chang; Fengbin Wang; Kiernan Connolly; Hanze Meng; Zhangli Su; Virginija Cvirkaite-Krupovic; Mart Krupovic; Edward H Egelman; Dong Si
Journal:  Biophys J       Date:  2022-06-28       Impact factor: 3.699

2.  Three families of Asgard archaeal viruses identified in metagenome-assembled genomes.

Authors:  Sofia Medvedeva; Jiarui Sun; Natalya Yutin; Eugene V Koonin; Takuro Nunoura; Christian Rinke; Mart Krupovic
Journal:  Nat Microbiol       Date:  2022-06-27       Impact factor: 30.964

  2 in total

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