Literature DB >> 27214401

An inhibitor of KDM5 demethylases reduces survival of drug-tolerant cancer cells.

Maia Vinogradova1, Victor S Gehling2, Amy Gustafson1, Shilpi Arora2, Charles A Tindell1, Catherine Wilson1, Kaylyn E Williamson2, Gulfem D Guler1, Pranoti Gangurde2, Wanda Manieri2, Jennifer Busby2, E Megan Flynn1, Fei Lan2, Hyo-Jin Kim1, Shobu Odate2, Andrea G Cochran1, Yichin Liu1, Matthew Wongchenko1, Yibin Yang1, Tommy K Cheung1, Tobias M Maile1, Ted Lau1, Michael Costa1, Ganapati V Hegde1, Erica Jackson1, Robert Pitti1, David Arnott1, Christopher Bailey2, Steve Bellon2, Richard T Cummings2, Brian K Albrecht2, Jean-Christophe Harmange2, James R Kiefer1, Patrick Trojer2, Marie Classon1.   

Abstract

The KDM5 family of histone demethylases catalyzes the demethylation of histone H3 on lysine 4 (H3K4) and is required for the survival of drug-tolerant persister cancer cells (DTPs). Here we report the discovery and characterization of the specific KDM5 inhibitor CPI-455. The crystal structure of KDM5A revealed the mechanism of inhibition of CPI-455 as well as the topological arrangements of protein domains that influence substrate binding. CPI-455 mediated KDM5 inhibition, elevated global levels of H3K4 trimethylation (H3K4me3) and decreased the number of DTPs in multiple cancer cell line models treated with standard chemotherapy or targeted agents. These findings show that pretreatment of cancer cells with a KDM5-specific inhibitor results in the ablation of a subpopulation of cancer cells that can serve as the founders for therapeutic relapse.

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Year:  2016        PMID: 27214401     DOI: 10.1038/nchembio.2085

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  45 in total

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Journal:  Nat Rev Genet       Date:  2006-09       Impact factor: 53.242

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Authors:  Kenichi Yamane; Keisuke Tateishi; Robert J Klose; Jia Fang; Laura A Fabrizio; Hediye Erdjument-Bromage; Joyce Taylor-Papadimitriou; Paul Tempst; Yi Zhang
Journal:  Mol Cell       Date:  2007-03-15       Impact factor: 17.970

4.  Chemical derivatization of histones for facilitated analysis by mass spectrometry.

Authors:  Benjamin A Garcia; Sahana Mollah; Beatrix M Ueberheide; Scott A Busby; Tara L Muratore; Jeffrey Shabanowitz; Donald F Hunt
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Structure of factor-inhibiting hypoxia-inducible factor 1: An asparaginyl hydroxylase involved in the hypoxic response pathway.

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

6.  Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins.

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Journal:  Nat Struct Mol Biol       Date:  2007-02-18       Impact factor: 15.369

7.  Overcoming intrinsic multidrug resistance in melanoma by blocking the mitochondrial respiratory chain of slow-cycling JARID1B(high) cells.

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Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

10.  Mutational landscape and significance across 12 major cancer types.

Authors:  Cyriac Kandoth; Michael D McLellan; Fabio Vandin; Kai Ye; Beifang Niu; Charles Lu; Mingchao Xie; Qunyuan Zhang; Joshua F McMichael; Matthew A Wyczalkowski; Mark D M Leiserson; Christopher A Miller; John S Welch; Matthew J Walter; Michael C Wendl; Timothy J Ley; Richard K Wilson; Benjamin J Raphael; Li Ding
Journal:  Nature       Date:  2013-10-17       Impact factor: 49.962

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  117 in total

1.  Structure-Based Engineering of Irreversible Inhibitors against Histone Lysine Demethylase KDM5A.

Authors:  John R Horton; Clayton B Woodcock; Qin Chen; Xu Liu; Xing Zhang; John Shanks; Ganesha Rai; Bryan T Mott; Daniel J Jansen; Stephen C Kales; Mark J Henderson; Matthew Cyr; Katherine Pohida; Xin Hu; Pranav Shah; Xin Xu; Ajit Jadhav; David J Maloney; Matthew D Hall; Anton Simeonov; Haian Fu; Paula M Vertino; Xiaodong Cheng
Journal:  J Med Chem       Date:  2018-11-15       Impact factor: 7.446

2.  Histone demethylases and their roles in cancer epigenetics.

Authors:  Alexandra D'Oto; Qing-Wu Tian; Andrew M Davidoff; Jun Yang
Journal:  J Med Oncol Ther       Date:  2016

3.  Dissecting contributions of catalytic and reader domains in regulation of histone demethylation.

Authors:  Nektaria Petronikolou; James E Longbotham; Danica Galonić Fujimori
Journal:  Methods Enzymol       Date:  2020-04-30       Impact factor: 1.600

Review 4.  The critical role of histone lysine demethylase KDM2B in cancer.

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Journal:  Am J Transl Res       Date:  2018-08-15       Impact factor: 4.060

5.  Extended Recognition of the Histone H3 Tail by Histone Demethylase KDM5A.

Authors:  Nektaria Petronikolou; James E Longbotham; Danica Galonić Fujimori
Journal:  Biochemistry       Date:  2020-01-30       Impact factor: 3.162

Review 6.  JARID1 Histone Demethylases: Emerging Targets in Cancer.

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Journal:  Trends Cancer       Date:  2017-09-12

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Review 8.  Inhibitors of Protein Methyltransferases and Demethylases.

Authors:  H Ümit Kaniskan; Michael L Martini; Jian Jin
Journal:  Chem Rev       Date:  2017-03-24       Impact factor: 60.622

Review 9.  Toward development of epigenetic drugs for central nervous system disorders: Modulating neuroplasticity via H3K4 methylation.

Authors:  Emily L Ricq; Jacob M Hooker; Stephen J Haggarty
Journal:  Psychiatry Clin Neurosci       Date:  2016-09-07       Impact factor: 5.188

Review 10.  Acquired Resistance to Drugs Targeting Tyrosine Kinases.

Authors:  Steven A Rosenzweig
Journal:  Adv Cancer Res       Date:  2018-03-02       Impact factor: 6.242

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