Literature DB >> 27199343

Understanding Intratumoral Heterogeneity: Lessons from the Analysis of At-Risk Tissue and Premalignant Lesions in the Colon.

Chelsie K Sievers1, Alyssa A Leystra1, Linda Clipson2, William F Dove3, Richard B Halberg4.   

Abstract

Advances in DNA sequencing have created new opportunities to better understand the biology of cancers. Attention is currently focused on precision medicine: does a cancer carry a mutation that is targetable with already available drugs? But, the timing at which multiple, targetable mutations arise during the adenoma to carcinoma sequence remains unresolved. Borras and colleagues identified mutations and allelic imbalance in at-risk mucosa and early polyps in the human colon. Their analyses indicate that mutations in key genes can arise quite early during tumorigenesis and that polyps are often multiclonal with at least two clones. These results are consistent with the "Big Bang" model of tumorigenesis, which postulates that intratumoral heterogeneity is a consequence of a mutational burst in the first few cell divisions following initiation that drives divergence from a single founder with unique but related clones coevolving. Emerging questions center around the ancestry of the tumor and impact of early intratumoral heterogeneity on tumor establishment, growth, progression, and most importantly, response to therapeutic intervention. Additional sequencing studies in which samples, especially at-risk tissue and premalignant neoplasms, are analyzed from animal models and humans will further our understanding of tumorigenesis and lead to more effective strategies for prevention and treatment. Cancer Prev Res; 9(8); 638-41. ©2016 AACRSee related article by Borras, et al., Cancer Prev Res 2016;9(6):417-427. ©2016 American Association for Cancer Research.

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Year:  2016        PMID: 27199343      PMCID: PMC4970935          DOI: 10.1158/1940-6207.CAPR-16-0096

Source DB:  PubMed          Journal:  Cancer Prev Res (Phila)        ISSN: 1940-6215


  19 in total

1.  Polyclonal origin of colonic adenomas in an XO/XY patient with FAP.

Authors:  M R Novelli; J A Williamson; I P Tomlinson; G Elia; S V Hodgson; I C Talbot; W F Bodmer; N A Wright
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

2.  Polyclonal structure of intestinal adenomas in ApcMin/+ mice with concomitant loss of Apc+ from all tumor lineages.

Authors:  A J Merritt; K A Gould; W F Dove
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

3.  Polyclonality of familial murine adenomas: analyses of mouse chimeras with low tumor multiplicity suggest short-range interactions.

Authors:  Andrew T Thliveris; Richard B Halberg; Linda Clipson; William F Dove; Ruth Sullivan; Mary Kay Washington; Stephen Stanhope; Michael A Newton
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

4.  Assessment of primary colorectal cancer heterogeneity by using whole-tumor texture analysis: contrast-enhanced CT texture as a biomarker of 5-year survival.

Authors:  Francesca Ng; Balaji Ganeshan; Robert Kozarski; Kenneth A Miles; Vicky Goh
Journal:  Radiology       Date:  2012-11-14       Impact factor: 11.105

5.  K-ras mutations and benefit from cetuximab in advanced colorectal cancer.

Authors:  Christos S Karapetis; Shirin Khambata-Ford; Derek J Jonker; Chris J O'Callaghan; Dongsheng Tu; Niall C Tebbutt; R John Simes; Haji Chalchal; Jeremy D Shapiro; Sonia Robitaille; Timothy J Price; Lois Shepherd; Heather-Jane Au; Christiane Langer; Malcolm J Moore; John R Zalcberg
Journal:  N Engl J Med       Date:  2008-10-23       Impact factor: 91.245

6.  Recruited cells can become transformed and overtake PDGF-induced murine gliomas in vivo during tumor progression.

Authors:  Elena I Fomchenko; Joseph D Dougherty; Karim Y Helmy; Amanda M Katz; Alexander Pietras; Cameron Brennan; Jason T Huse; Ana Milosevic; Eric C Holland
Journal:  PLoS One       Date:  2011-07-06       Impact factor: 3.240

7.  A Big Bang model of human colorectal tumor growth.

Authors:  Andrea Sottoriva; Haeyoun Kang; Zhicheng Ma; Trevor A Graham; Matthew P Salomon; Junsong Zhao; Paul Marjoram; Kimberly Siegmund; Michael F Press; Darryl Shibata; Christina Curtis
Journal:  Nat Genet       Date:  2015-02-09       Impact factor: 38.330

8.  Identification of neutral tumor evolution across cancer types.

Authors:  Marc J Williams; Benjamin Werner; Chris P Barnes; Trevor A Graham; Andrea Sottoriva
Journal:  Nat Genet       Date:  2016-01-18       Impact factor: 38.330

9.  Biomarker discovery for colon cancer using a 761 gene RT-PCR assay.

Authors:  Kim M Clark-Langone; Jenny Y Wu; Chithra Sangli; Angela Chen; James L Snable; Anhthu Nguyen; James R Hackett; Joffre Baker; Greg Yothers; Chungyeul Kim; Maureen T Cronin
Journal:  BMC Genomics       Date:  2007-08-15       Impact factor: 3.969

10.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

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  10 in total

Review 1.  Big Bang Tumor Growth and Clonal Evolution.

Authors:  Ruping Sun; Zheng Hu; Christina Curtis
Journal:  Cold Spring Harb Perspect Med       Date:  2018-05-01       Impact factor: 6.915

2.  Surface microstructures are associated with mutational intratumoral heterogeneity in colorectal tumors.

Authors:  Taku Harada; Eiichiro Yamamoto; Hiro-O Yamano; Hironori Aoki; Hiro-O Matsushita; Kenjiro Yoshikawa; Ryo Takagi; Eiji Harada; Yoshihito Tanaka; Yuko Yoshida; Makoto Eizuka; Akira Yorozu; Gota Sudo; Hiroshi Kitajima; Takeshi Niinuma; Masahiro Kai; Yasushi Sasaki; Takashi Tokino; Tamotsu Sugai; Hiroshi Nakase; Hiromu Suzuki
Journal:  J Gastroenterol       Date:  2018-06-11       Impact factor: 7.527

Review 3.  A population genetics perspective on the determinants of intra-tumor heterogeneity.

Authors:  Zheng Hu; Ruping Sun; Christina Curtis
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-06       Impact factor: 10.680

4.  Liver Protein Expression in NASH Mice on a High-Fat Diet: Response to Multi-Mineral Intervention.

Authors:  James Varani; Shannon D McClintock; Randall N Knibbs; Isabelle Harber; Dania Zeidan; Mohamed Ali H Jawad-Makki; Muhammad N Aslam
Journal:  Front Nutr       Date:  2022-05-11

5.  Calcium-Induced Differentiation of Human Colon Adenomas in Colonoid Culture: Calcium Alone versus Calcium with Additional Trace Elements.

Authors:  Shannon D McClintock; Justin A Colacino; Durga Attili; Michael K Dame; Aliah Richter; Anusha R Reddy; Venkatesha Basrur; Areeba H Rizvi; D Kim Turgeon; James Varani; Muhammad N Aslam
Journal:  Cancer Prev Res (Phila)       Date:  2018-04-10

6.  Mathematical modeling identifies optimum lapatinib dosing schedules for the treatment of glioblastoma patients.

Authors:  Shayna Stein; Rui Zhao; Hiroshi Haeno; Igor Vivanco; Franziska Michor
Journal:  PLoS Comput Biol       Date:  2018-01-02       Impact factor: 4.475

7.  Calcium-induced differentiation in normal human colonoid cultures: Cell-cell / cell-matrix adhesion, barrier formation and tissue integrity.

Authors:  Durga Attili; Shannon D McClintock; Areeba H Rizvi; Shailja Pandya; Humza Rehman; Daniyal M Nadeem; Aliah Richter; Dafydd Thomas; Michael K Dame; Danielle Kim Turgeon; James Varani; Muhammad N Aslam
Journal:  PLoS One       Date:  2019-04-17       Impact factor: 3.240

8.  Clinical laboratory and imaging evidence for effectiveness of agarose-agarose macrobeads containing stem-like cells derived from a mouse renal adenocarcinoma cell population (RMBs) in treatment-resistant, advanced metastatic colorectal cancer: Evaluation of a biological-systems approach to cancer therapy (U.S. FDA IND-BB 10091; NCT 02046174, NCT 01053013).

Authors:  Barry H Smith; Lawrence S Gazda; Thomas J Fahey; Angelica Nazarian; Melissa A Laramore; Prithy Martis; Zoe P Andrada; Joanne Thomas; Tapan Parikh; Sudipta Sureshbabu; Nathaniel Berman; Allyson J Ocean; Richard D Hall; David J Wolf
Journal:  Chin J Cancer Res       Date:  2018-02       Impact factor: 5.087

Review 9.  Characterization of cancer genomic heterogeneity by next-generation sequencing advances precision medicine in cancer treatment.

Authors:  Jialing Zhang; Stephan Stanislaw Späth; Sadie L Marjani; Wengeng Zhang; Xinghua Pan
Journal:  Precis Clin Med       Date:  2018-06-14

10.  ST2 and regulatory T cells in the colorectal adenoma/carcinoma microenvironment: implications for diseases progression and prognosis.

Authors:  Guanglin Cui; Aping Yuan; Zhenfeng Li; Rasmus Goll; Jon Florholmen
Journal:  Sci Rep       Date:  2020-04-03       Impact factor: 4.379

  10 in total

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