Literature DB >> 27153285

Three decades of nanopore sequencing.

David Deamer1, Mark Akeson1, Daniel Branton2.   

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Year:  2016        PMID： 27153285      PMCID： PMC6733523          DOI： 10.1038/nbt.3423

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  51 in total

1.  Rapid nanopore discrimination between single polynucleotide molecules.

Authors:  A Meller; L Nivon; E Brandin; J Golovchenko; D Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

2.  DNA heterogeneity and phosphorylation unveiled by single-molecule electrophoresis.

Authors:  Hui Wang; James E Dunning; Albert P-H Huang; Jacqueline A Nyamwanda; Daniel Branton
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

3.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

4.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

5.  Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore.

Authors:  Seico Benner; Roger J A Chen; Noah A Wilson; Robin Abu-Shumays; Nicholas Hurt; Kate R Lieberman; David W Deamer; William B Dunbar; Mark Akeson
Journal:  Nat Nanotechnol       Date:  2007-10-28       Impact factor: 39.213

6.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

7.  Ionic channels formed by Staphylococcus aureus alpha-toxin: voltage-dependent inhibition by divalent and trivalent cations.

Authors:  G Menestrina
Journal:  J Membr Biol       Date:  1986       Impact factor: 1.843

8.  Nucleobase recognition in ssDNA at the central constriction of the alpha-hemolysin pore.

Authors:  David Stoddart; Andrew J Heron; Jochen Klingelhoefer; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

9.  De novo sequencing and variant calling with nanopores using PoreSeq.

Authors:  Tamas Szalay; Jene A Golovchenko
Journal:  Nat Biotechnol       Date:  2015-09-09       Impact factor: 54.908

10.  Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool.

Authors:  Thomas Hoenen; Allison Groseth; Kyle Rosenke; Robert J Fischer; Andreas Hoenen; Seth D Judson; Cynthia Martellaro; Darryl Falzarano; Andrea Marzi; R Burke Squires; Kurt R Wollenberg; Emmie de Wit; Joseph Prescott; David Safronetz; Neeltje van Doremalen; Trenton Bushmaker; Friederike Feldmann; Kristin McNally; Fatorma K Bolay; Barry Fields; Tara Sealy; Mark Rayfield; Stuart T Nichol; Kathryn C Zoon; Moses Massaquoi; Vincent J Munster; Heinz Feldmann
Journal:  Emerg Infect Dis       Date:  2016-02       Impact factor: 6.883
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  190 in total

1.  Accurate Typing of Human Leukocyte Antigen Class I Genes by Oxford Nanopore Sequencing.

Authors:  Chang Liu; Fangzhou Xiao; Jessica Hoisington-Lopez; Kathrin Lang; Philipp Quenzel; Brian Duffy; Robi D Mitra
Journal:  J Mol Diagn       Date:  2018-04-03       Impact factor: 5.568

2.  Resolving MiSeq-Generated Ambiguities in HLA-DPB1 Typing by Using the Oxford Nanopore Technology.

Authors:  Jamie L Duke; Timothy L Mosbruger; Deborah Ferriola; Nilesh Chitnis; Taishan Hu; Nikolaos Tairis; David J Margolis; Dimitri S Monos
Journal:  J Mol Diagn       Date:  2019-06-04       Impact factor: 5.568

3.  Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.

Authors:  Hongxu Ding; Andrew D Bailey; Miten Jain; Hugh Olsen; Benedict Paten
Journal:  Bioinformatics       Date:  2020-12-08       Impact factor: 6.937

Review 4.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

Review 5.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

6.  Pore translocation of knotted DNA rings.

Authors:  Antonio Suma; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

7.  Protein Motion and Configurations in a Form-Fitting Nanopore: Avidin in ClyA.

Authors:  Bo Lu; Chris Stokes; Monifa Fahie; Min Chen; Jene A Golovchenko; Lene Vestergaard Hau
Journal:  Biophys J       Date:  2018-08-04       Impact factor: 4.033

8.  From current trace to the understanding of confined media.

Authors:  Jean Roman; Bruno Le Pioufle; Loïc Auvray; Juan Pelta; Laurent Bacri
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-03       Impact factor: 1.890

9.  Wavelet Denoising of High-Bandwidth Nanopore and Ion-Channel Signals.

Authors:  Siddharth Shekar; Chen-Chi Chien; Andreas Hartel; Peijie Ong; Oliver B Clarke; Andrew Marks; Marija Drndic; Kenneth L Shepard
Journal:  Nano Lett       Date:  2019-01-07       Impact factor: 11.189

10.  Displacement chemistry-based nanopore analysis of nucleic acids in complicated matrices.

Authors:  Liang Wang; Xiaohan Chen; Shuo Zhou; Golbarg M Roozbahani; Youwen Zhang; Deqiang Wang; Xiyun Guan
Journal:  Chem Commun (Camb)       Date:  2018-12-11       Impact factor: 6.222
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