Literature DB >> 17339846

Single-molecule analysis of DNA-protein complexes using nanopores.

Breton Hornblower1, Amy Coombs, Richard D Whitaker, Anatoly Kolomeisky, Stephen J Picone, Amit Meller, Mark Akeson.   

Abstract

We present a method for rapid measurement of DNA-protein interactions using voltage-driven threading of single DNA molecules through a protein nanopore. Electrical force applied to individual ssDNA-exonuclease I complexes pulls the two molecules apart, while ion current probes the dissociation rate of the complex. Nanopore force spectroscopy (NFS) reveals energy barriers affecting complex dissociation. This method can be applied to other nucleic acid-protein complexes, using protein or solid-state nanopore devices.

Mesh:

Substances:

Year:  2007        PMID: 17339846     DOI: 10.1038/nmeth1021

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  100 in total

1.  SDS-assisted protein transport through solid-state nanopores.

Authors:  Laura Restrepo-Pérez; Shalini John; Aleksei Aksimentiev; Chirlmin Joo; Cees Dekker
Journal:  Nanoscale       Date:  2017-08-17       Impact factor: 7.790

2.  DNA translocation and unzipping through a nanopore: some geometrical effects.

Authors:  J Muzard; M Martinho; J Mathé; U Bockelmann; V Viasnoff
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Synchronous optical and electrical detection of biomolecules traversing through solid-state nanopores.

Authors:  Gautam V Soni; Alon Singer; Zhiliang Yu; Yingjie Sun; Ben McNally; Amit Meller
Journal:  Rev Sci Instrum       Date:  2010-01       Impact factor: 1.523

Review 4.  Applications of biological pores in nanomedicine, sensing, and nanoelectronics.

Authors:  Sheereen Majd; Erik C Yusko; Yazan N Billeh; Michael X Macrae; Jerry Yang; Michael Mayer
Journal:  Curr Opin Biotechnol       Date:  2010-06-18       Impact factor: 9.740

5.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

Review 6.  Single molecule sensing by nanopores and nanopore devices.

Authors:  Li-Qun Gu; Ji Wook Shim
Journal:  Analyst       Date:  2009-12-22       Impact factor: 4.616

7.  Detection and Mapping of DNA Methylation with 2D Material Nanopores.

Authors:  Hu Qiu; Aditya Sarathy; Klaus Schulten; Jean-Pierre Leburton
Journal:  NPJ 2D Mater Appl       Date:  2017-04-11

Review 8.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

9.  Enzyme-modulated DNA translocation through a nanopore.

Authors:  Ajay S Panwar; M Muthukumar
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

10.  Electro-osmotic screening of the DNA charge in a nanopore.

Authors:  Binquan Luan; Aleksei Aksimentiev
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-08-26
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.