Literature DB >> 27152131

Overview of Post Cohen-Boyer Methods for Single Segment Cloning and for Multisegment DNA Assembly.

Bryan Sands1, Roger Brent1.   

Abstract

In 1973, Cohen and coworkers published a foundational paper describing the cloning of DNA fragments into plasmid vectors. In it, they used DNA segments made by digestion with restriction enzymes and joined these in vitro with DNA ligase. These methods established working recombinant DNA technology and enabled the immediate start of the biotechnology industry. Since then, "classical" recombinant DNA technology using restriction enzymes and DNA ligase has matured. At the same time, researchers have developed numerous ways to generate large, complex, multisegment DNA constructions that offer advantages over classical techniques. Here, we provide an overview of "post-Cohen-Boyer" techniques used for cloning single segments into vectors (T/A, Topo cloning, Gateway and Recombineering) and for multisegment DNA assembly (BioBricks, Golden Gate, Gibson, yeast homologous recombination in vivo, and ligase cycling reaction). We compare and contrast these methods and also discuss issues that researchers should consider before choosing a particular multisegment DNA assembly method. © 2016 by John Wiley & Sons, Inc.
Copyright © 2016 John Wiley & Sons, Inc.

Entities:  

Keywords:  DNA cloning; biotechnology; molecular biology; multisegment DNA assembly; plasmid construction

Year:  2016        PMID: 27152131      PMCID: PMC4853029          DOI: 10.1002/0471142727.mb0326s113

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  29 in total

1.  Chain reaction cloning: a one-step method for directional ligation of multiple DNA fragments.

Authors:  C J Pachuk; M Samuel; J A Zurawski; L Snyder; P Phillips; C Satishchandran
Journal:  Gene       Date:  2000-02-08       Impact factor: 3.688

2.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  Assembly of BioBrick standard biological parts using three antibiotic assembly.

Authors:  Reshma Shetty; Meagan Lizarazo; Randy Rettberg; Thomas F Knight
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

4.  Construction of biologically functional bacterial plasmids in vitro.

Authors:  S N Cohen; A C Chang; H W Boyer; R B Helling
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

5.  Novel approach to molecular cloning and polynucleotide synthesis using vaccinia DNA topoisomerase.

Authors:  S Shuman
Journal:  J Biol Chem       Date:  1994-12-23       Impact factor: 5.157

6.  Fast track assembly of multigene constructs using Golden Gate cloning and the MoClo system.

Authors:  Stefan Werner; Carola Engler; Ernst Weber; Ramona Gruetzner; Sylvestre Marillonnet
Journal:  Bioeng Bugs       Date:  2012-01-01

7.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

8.  Positive-selection vectors using the F plasmid ccdB killer gene.

Authors:  P Bernard; P Gabant; E M Bahassi; M Couturier
Journal:  Gene       Date:  1994-10-11       Impact factor: 3.688

9.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

Authors:  R S Sikorski; P Hieter
Journal:  Genetics       Date:  1989-05       Impact factor: 4.562

10.  iBrick: a new standard for iterative assembly of biological parts with homing endonucleases.

Authors:  Jia-Kun Liu; Wei-Hua Chen; Shuang-Xi Ren; Guo-Ping Zhao; Jin Wang
Journal:  PLoS One       Date:  2014-10-20       Impact factor: 3.240

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  5 in total

1.  A Bacterial Adenylate Cyclase-Based Two-Hybrid System Compatible with Gateway® Cloning.

Authors:  Macy G Olson; Megan Goldammer; Emilie Gauliard; Daniel Ladant; Scot P Ouellette
Journal:  Methods Mol Biol       Date:  2018

2.  A toolkit for DNA assembly, genome engineering and multicolor imaging for C. elegans.

Authors:  Bryan Sands; Nikolay Burnaevskiy; Soo R Yun; Mathew M Crane; Matt Kaeberlein; Alexander Mendenhall
Journal:  Transl Med Aging       Date:  2018-04-13

3.  Golden Gate Assembly system dedicated to complex pathway manipulation in Yarrowia lipolytica.

Authors:  Ewelina Celińska; Rodrigo Ledesma-Amaro; Macarena Larroude; Tristan Rossignol; Cyrille Pauthenier; Jean-Marc Nicaud
Journal:  Microb Biotechnol       Date:  2017-02-19       Impact factor: 5.813

4.  Efficient golden gate assembly of DNA constructs for single molecule force spectroscopy and imaging.

Authors:  Nicholas A W Bell; Justin E Molloy
Journal:  Nucleic Acids Res       Date:  2022-07-22       Impact factor: 19.160

Review 5.  Using measures of single-cell physiology and physiological state to understand organismic aging.

Authors:  Alexander Mendenhall; Monica Driscoll; Roger Brent
Journal:  Aging Cell       Date:  2015-11-29       Impact factor: 9.304

  5 in total

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