Literature DB >> 21601683

Assembly of BioBrick standard biological parts using three antibiotic assembly.

Reshma Shetty1, Meagan Lizarazo, Randy Rettberg, Thomas F Knight.   

Abstract

An underlying goal of synthetic biology is to make the process of engineering biological systems easier and more reliable. In support of this goal, we developed BioBrick assembly standard 10 to enable the construction of systems from standardized genetic parts. The BioBrick standard underpins the distributed efforts by the synthetic biology research community to develop a collection of more than 6000 standard genetic parts available from the Registry of Standard Biological Parts. Here, we describe the three antibiotic assembly method for physical composition of BioBrick parts and provide step-by-step protocols. The method relies on a combination of positive and negative selection to eliminate time- and labor-intensive steps such as column cleanup and agarose gel purification of DNA during part assembly.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21601683     DOI: 10.1016/B978-0-12-385120-8.00013-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  24 in total

1.  Overview of Post Cohen-Boyer Methods for Single Segment Cloning and for Multisegment DNA Assembly.

Authors:  Bryan Sands; Roger Brent
Journal:  Curr Protoc Mol Biol       Date:  2016-01

2.  Precise control of lycopene production to enable a fast-responding, minimal-equipment biosensor.

Authors:  Monica P McNerney; Mark P Styczynski
Journal:  Metab Eng       Date:  2017-08-05       Impact factor: 9.783

3.  Riboswitch-inspired toehold riboregulators for gene regulation in Escherichia coli.

Authors:  Tianhe Wang; Friedrich C Simmel
Journal:  Nucleic Acids Res       Date:  2022-04-21       Impact factor: 19.160

4.  Active Analyte Import Improves the Dynamic Range and Sensitivity of a Vitamin B12 Biosensor.

Authors:  Monica P McNerney; Fernanda Piorino; Cirstyn L Michel; Mark P Styczynski
Journal:  ACS Synth Biol       Date:  2020-02-13       Impact factor: 5.110

5.  Amplified insert assembly: an optimized approach to standard assembly of BioBrickTM genetic circuits.

Authors:  Michael A Speer; Tom L Richard
Journal:  J Biol Eng       Date:  2011-12-16       Impact factor: 4.355

6.  No training required: experimental tests support homology-based DNA assembly as a best practice in synthetic biology.

Authors:  Afnan Azizi; Wilson Lam; Hilary Phenix; Lioudmila Tepliakova; Ian J Roney; Daniel Jedrysiak; Alex Power; Vaibhav Gupta; Nada Elnour; Martin Hanzel; Alexandra C Tzahristos; Shihab Sarwar; Mads Kærn
Journal:  J Biol Eng       Date:  2015-06-12       Impact factor: 4.355

7.  RapGene: a fast and accurate strategy for synthetic gene assembly in Escherichia coli.

Authors:  Massimiliano Zampini; Pauline Rees Stevens; Justin A Pachebat; Alison Kingston-Smith; Luis A J Mur; Finbarr Hayes
Journal:  Sci Rep       Date:  2015-06-11       Impact factor: 4.379

8.  Design and testing of a synthetic biology framework for genetic engineering of Corynebacterium glutamicum.

Authors:  Pablo Ravasi; Salvador Peiru; Hugo Gramajo; Hugo G Menzella
Journal:  Microb Cell Fact       Date:  2012-11-07       Impact factor: 5.328

9.  Parallel in vivo DNA assembly by recombination: experimental demonstration and theoretical approaches.

Authors:  Zhenyu Shi; Anthony G Wedd; Sally L Gras
Journal:  PLoS One       Date:  2013-02-28       Impact factor: 3.240

Review 10.  Expression of codon optimized genes in microbial systems: current industrial applications and perspectives.

Authors:  Claudia Elena; Pablo Ravasi; María E Castelli; Salvador Peirú; Hugo G Menzella
Journal:  Front Microbiol       Date:  2014-02-04       Impact factor: 5.640

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