| Literature DB >> 27145868 |
Daniel Oduro-Mensah1,2, Noah Obeng-Nkrumah3, Evelyn Yayra Bonney4, Ebenezer Oduro-Mensah5, Kingsley Twum-Danso3, Yaa Difie Osei6, Sammy Tawiah Sackey6.
Abstract
BACKGROUND: Antibiotic resistance due to the presence of extended-spectrum beta-lactamases (ESBLs) among Enterobacteriaceae is a worldwide problem. Data from Ghana regarding this resistance mechanism is limited. This study was designed to investigate the presence of TEM-type ESBL genes, their locations and their conjugabilities in clinical isolates of enterobacteria collected from the Korle-Bu Teaching Hospital in Ghana.Entities:
Keywords: Beta-lactamase; Conjugation; Inhibition zone chart; Reamplification
Mesh:
Substances:
Year: 2016 PMID: 27145868 PMCID: PMC4857374 DOI: 10.1186/s12941-016-0144-2
Source DB: PubMed Journal: Ann Clin Microbiol Antimicrob ISSN: 1476-0711 Impact factor: 3.944
Sequences, annealing temperatures and expected product sizes of primer sequences targeting the specified ESBL genes
| Gene | Primer | Annealing temp. (°C) | Expected product size (bp) |
|---|---|---|---|
|
|
| 45 | 720 |
|
|
| 60 | 726 |
|
|
| 55 | 499 |
Sources Bonomo et al. [22] (bla TEM), Hanson et al. [23] (bla CTX-M), Bonomo et al. [24] (bla SHV)
Distribution of study isolates according to clinical sources
| Isolate | Clinical source | Number of species | ||||||
|---|---|---|---|---|---|---|---|---|
| Urine | Blood | Sputum | CSF | HVS | Othera | Total | % | |
|
| 2 | 1 | 6 | 0 | 1 | 0 | 10 | 7.3 |
|
| 2 | 5 | 1 | 0 | 0 | 0 | 8 | 5.8 |
|
| 42 | 9 | 7 | 1 | 3 | 7 | 69 | 50.4 |
|
| 23 | 6 | 8 | 0 | 4 | 3 | 44 | 32.1 |
|
| 1 | 0 | 4 | 0 | 1 | 0 | 6 | 4.4 |
| Total | 70 (51.1 %) | 21 (15.3 %) | 26 (19.0 %) | 1 (0.7 %) | 9 (6.6 %) | 10 (7.3 %) | 137 | 100 |
Though only one instance of infection was observed from three CSF samples tested, it was separated due to the clinical significance of infection in the normally sterile cerebrospinal region
CSF cerebrospinal fluid, HVS high vaginal swab
aRefers to miscellaneous clinical sources (wound swabs, pus, aspirates, ear swabs)
Fig. 1Appearance after over-night incubation for ESBL phenotyping of (a) an ESBL-positive strain and b an ESBL-negative strain. Plate a shows an example of what was taken as a positive ESBL test result. Plate b shows an example of a negative ESBL test result. In both cases, cefpodoxime was used only to screen and not in confirmation. Cefotaxime and ceftazidime were used in both screening and confirmation. CPD cefpodoxime 10 µg, CPD/CLV cefpodoxime 10 µg + clavulanate 10 µg, CTX cefotaxime 30 µg, CTX/CLV cefotaxime 30 µg + clavulanate 10 µg, CAZ ceftazidime 30 µg, CAZ/CLV ceftazidime 30 µg + clavulanate 10 µg
Fig. 2Inhibition zone chart for Klebsiella spp. and E. coli isolates. Zone differences observed between screening and confirmatory tests using each of the screening antibiotics alone and in its appropriate combination with clavulanate for confirmation. CPD cefpodoxime, CTX cefotaxime, CAZ ceftazidime. Region a zone differences for ESBL-positive phenotype. Region b zone-differences for ESBL-negative phenotype. Region (c) unusual zone differences
ESBL prevalence amongst study isolates
| Isolate | Not confirmed ESBL-positivea | ESBL prevalence | |
|---|---|---|---|
| Confirmed ESBL-positive | % of overall prevalence | ||
|
| 4 | 6 (60 %) | 11.5 |
|
| 3 | 5 (62.5 %) | 9.6 |
|
| 51 | 18 (26.1 %) | 34.6 |
|
| 22 | 22 (50.0 %) | 42.3 |
|
| 5 | 1 (16.7 %) | 1.9 |
| Total | 85 | 52 (37.9 %) | 100 |
ESBL prevalence was determined using MAST D52C combined discs by the Kirby-Bauer method of antibiotic susceptibility testing
aThe column for “not confirmed ESBL-positive” includes isolates that failed screening tests as well as those isolates that may have passed the screening test(s) but failed confirmatory tests
Distribution of ESBL-producing strains according to clinical sources
| Clinical source | Sample size | ESBL phenotype present | |
|---|---|---|---|
| Number | % of total number of ESBL-producers | ||
| Urine | 70 | 31 (44.3 %) | 59.6 |
| Blood | 21 | 9 (42.9 %) | 17.3 |
| CSF | 1 | 0 (0) | 0 |
| HVS | 9 | 3 (33.3 %) | 5.8 |
| Sputum | 26 | 5 (19.2 %) | 9.6 |
| Othera | 10 | 4 (40 %) | 7.7 |
| Total | 137 | 52 | 100 |
HVS high vaginal swab, CSF cerebrospinal fluid
aRefers to miscellaneous clinical sources (wound swabs, pus, aspirates, and ear swabs)
Conjugabilities of ESBL-producer phenotype from isolates confirmed for ESBL production
| Donor isolate | Total | Conjugation successful | Percent conjugability (%) |
|---|---|---|---|
|
| 22 | 19 | 86.4 |
|
| 18 | 9 | 50.0 |
|
| 5 | 2 | 40.0 |
|
| 4 | 1 | 25.0 |
|
| 1 | 1 | 100 |
| Total | 50 | 32 | 64 |
ESBL-positive study isolates were conjugated to nalidixic acid-resistant E. coli K-12. Selection of transconjugants was done on MacConkey agar (MAST, UK) supplemented with ampicillin and nalidixic acid
Fig. 3Bands observed after reamplification of previous PCR product with the TEM family-specific primers. PCR products were resolved on 2 % agarose gel stained with 1 µg/ml ethidium bromide at 100 V for 30 min. The gel was photographed under UV illumination. Lane M 1 kb plus DNA ladder, Lanes 2, 4, 5, 7, 8, 10 PCR product from showing amplified TEM gene with band position at 720 bp, Lane 6 TEM-3-producing E. coli NCTC 13351, Lanes 1, 3, 9 PCR product with no amplification
Numbers of detected conjugative TEM genes
| Isolate | TEM | Number that had transferred by conjugation |
|---|---|---|
|
| 0 | 0 |
|
| 1 | 0 |
|
| 11 | 3 |
|
| 12 | 8 |
|
| 1 | 1 |
The TEM primer produced PCR amplification product in DNA extracts from 25 of the ESBL-positive isolates. Verification of which of these genes had been transferred by conjugation was obtained by comparing this data to results of PCR on plasmid-DNA extracts from the transconjugants