Literature DB >> 27137495

Transcription Regulation in Archaea.

Alexandra M Gehring1, Julie E Walker1, Thomas J Santangelo2.   

Abstract

The known diversity of metabolic strategies and physiological adaptations of archaeal species to extreme environments is extraordinary. Accurate and responsive mechanisms to ensure that gene expression patterns match the needs of the cell necessitate regulatory strategies that control the activities and output of the archaeal transcription apparatus. Archaea are reliant on a single RNA polymerase for all transcription, and many of the known regulatory mechanisms employed for archaeal transcription mimic strategies also employed for eukaryotic and bacterial species. Novel mechanisms of transcription regulation have become apparent by increasingly sophisticated in vivo and in vitro investigations of archaeal species. This review emphasizes recent progress in understanding archaeal transcription regulatory mechanisms and highlights insights gained from studies of the influence of archaeal chromatin on transcription.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Mesh:

Substances:

Year:  2016        PMID: 27137495      PMCID: PMC4936096          DOI: 10.1128/JB.00255-16

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  193 in total

1.  The orientation of DNA in an archaeal transcription initiation complex.

Authors:  M S Bartlett; M Thomm; E P Geiduschek
Journal:  Nat Struct Biol       Date:  2000-09

2.  Activation of archaeal transcription by recruitment of the TATA-binding protein.

Authors:  Mohamed Ouhammouch; Robert E Dewhurst; Winfried Hausner; Michael Thomm; E Peter Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-11       Impact factor: 11.205

3.  Forward translocation is the natural pathway of RNA release at an intrinsic terminator.

Authors:  Thomas J Santangelo; Jeffrey W Roberts
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

4.  Elements of an archaeal promoter defined by mutational analysis.

Authors:  J Hain; W D Reiter; U Hüdepohl; W Zillig
Journal:  Nucleic Acids Res       Date:  1992-10-25       Impact factor: 16.971

5.  Transcription termination controls prophage maintenance in Escherichia coli genomes.

Authors:  Rachid Menouni; Stéphanie Champ; Leon Espinosa; Marc Boudvillain; Mireille Ansaldi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

6.  An archaeal histone is required for transformation of Thermococcus kodakarensis.

Authors:  Lubomira Čuboňováa; Masahiro Katano; Tamotsu Kanai; Haruyuki Atomi; John N Reeve; Thomas J Santangelo
Journal:  J Bacteriol       Date:  2012-10-12       Impact factor: 3.490

7.  Opening and closing of the bacterial RNA polymerase clamp.

Authors:  Anirban Chakraborty; Dongye Wang; Yon W Ebright; You Korlann; Ekaterine Kortkhonjia; Taiho Kim; Saikat Chowdhury; Sivaramesh Wigneshweraraj; Herbert Irschik; Rolf Jansen; B Tracy Nixon; Jennifer Knight; Shimon Weiss; Richard H Ebright
Journal:  Science       Date:  2012-08-03       Impact factor: 47.728

8.  Core structure of the yeast spt4-spt5 complex: a conserved module for regulation of transcription elongation.

Authors:  Min Guo; Fei Xu; Jena Yamada; Thea Egelhofer; Yongxiang Gao; Grant A Hartzog; Maikun Teng; Liwen Niu
Journal:  Structure       Date:  2008-11-12       Impact factor: 5.006

9.  RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

Authors:  Claire Toffano-Nioche; Alban Ott; Estelle Crozat; An N Nguyen; Matthias Zytnicki; Fabrice Leclerc; Patrick Forterre; Philippe Bouloc; Daniel Gautheret
Journal:  RNA Biol       Date:  2013-07-02       Impact factor: 4.652

10.  Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA.

Authors:  James A Coker; Shiladitya DasSarma
Journal:  BMC Genet       Date:  2007-09-24       Impact factor: 2.797

View more
  20 in total

1.  Archaeal RNA polymerase arrests transcription at DNA lesions.

Authors:  Alexandra M Gehring; Thomas J Santangelo
Journal:  Transcription       Date:  2017-06-09

2.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

3.  Factor-dependent archaeal transcription termination.

Authors:  Julie E Walker; Olivia Luyties; Thomas J Santangelo
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

Review 4.  Contributions of single-cell genomics to our understanding of planktonic marine archaea.

Authors:  A E Santoro; M Kellom; S M Laperriere
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-10-07       Impact factor: 6.237

5.  An Archaeal Fluoride-Responsive Riboswitch Provides an Inducible Expression System for Hyperthermophiles.

Authors:  Michael Clayton Speed; Brett W Burkhart; Jonathan W Picking; Thomas J Santangelo
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

Review 6.  The Role of Archaeal Chromatin in Transcription.

Authors:  Travis J Sanders; Craig J Marshall; Thomas J Santangelo
Journal:  J Mol Biol       Date:  2019-05-11       Impact factor: 5.469

7.  A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Authors:  Mar Martinez-Pastor; W Andrew Lancaster; Peter D Tonner; Michael W W Adams; Amy K Schmid
Journal:  Nucleic Acids Res       Date:  2017-09-29       Impact factor: 16.971

8.  Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response.

Authors:  Frank Schult; Thuong N Le; Andreas Albersmeier; Bernadette Rauch; Patrick Blumenkamp; Chris van der Does; Alexander Goesmann; Jörn Kalinowski; Sonja-Verena Albers; Bettina Siebers
Journal:  Nucleic Acids Res       Date:  2018-08-21       Impact factor: 16.971

9.  Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms.

Authors:  Luis Martinez-Liu; Rafael Hernandez-Guerrero; Nancy Rivera-Gomez; Mario Alberto Martinez-Nuñez; Pedro Escobar-Turriza; Eveline Peeters; Ernesto Perez-Rueda
Journal:  PLoS One       Date:  2021-07-02       Impact factor: 3.240

10.  Bypassing the Need for the Transcriptional Activator EarA through a Spontaneous Deletion in the BRE Portion of the fla Operon Promoter in Methanococcus maripaludis.

Authors:  Yan Ding; Alison Berezuk; Cezar M Khursigara; Ken F Jarrell
Journal:  Front Microbiol       Date:  2017-07-17       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.