Literature DB >> 33112729

Archaeal transcription.

Breanna R Wenck1, Thomas J Santangelo1.   

Abstract

Increasingly sophisticated biochemical and genetic techniques are unraveling the regulatory factors and mechanisms that control gene expression in the Archaea. While some similarities in regulatory strategies are universal, archaeal-specific regulatory strategies are emerging to complement a complex patchwork of shared archaeal-bacterial and archaeal-eukaryotic regulatory mechanisms employed in the archaeal domain. The prokaryotic archaea encode core transcription components with homology to the eukaryotic transcription apparatus and also share a simplified eukaryotic-like initiation mechanism, but also deploy tactics common to bacterial systems to regulate promoter usage and influence elongation-termination decisions. We review the recently established complete archaeal transcription cycle, highlight recent findings of the archaeal transcription community and detail the expanding post-initiation regulation imposed on archaeal transcription.

Keywords:  Archaea; Eta; FttA; RNA polymerase; Spt4/5; TFS; archaeal histones; transcription

Year:  2020        PMID: 33112729      PMCID: PMC7714419          DOI: 10.1080/21541264.2020.1838865

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  131 in total

Review 1.  Conformational toggle triggers a modulator of RNA polymerase activity.

Authors:  Padraig Deighan; Ann Hochschild
Journal:  Trends Biochem Sci       Date:  2006-07-11       Impact factor: 13.807

2.  Molecular phylogeny of Archaea from soil.

Authors:  S B Bintrim; T J Donohue; J Handelsman; G P Roberts; R M Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1997-01-07       Impact factor: 11.205

3.  Physical and Functional Compartmentalization of Archaeal Chromosomes.

Authors:  Naomichi Takemata; Rachel Y Samson; Stephen D Bell
Journal:  Cell       Date:  2019-09-19       Impact factor: 41.582

4.  Exploring the (Almost) Unknown: Archaeal Two-Component Systems.

Authors:  Tino Krell
Journal:  J Bacteriol       Date:  2018-03-12       Impact factor: 3.490

5.  The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition.

Authors:  S D Bell; A B Brinkman; J van der Oost; S P Jackson
Journal:  EMBO Rep       Date:  2001-02       Impact factor: 8.807

6.  Mfd Dynamically Regulates Transcription via a Release and Catch-Up Mechanism.

Authors:  Tung T Le; Yi Yang; Chuang Tan; Margaret M Suhanovsky; Robert M Fulbright; James T Inman; Ming Li; Jaeyoon Lee; Sarah Perelman; Jeffrey W Roberts; Alexandra M Deaconescu; Michelle D Wang
Journal:  Cell       Date:  2017-12-07       Impact factor: 41.582

Review 7.  Molecular Mechanisms of Transcription Initiation-Structure, Function, and Evolution of TFE/TFIIE-Like Factors and Open Complex Formation.

Authors:  Fabian Blombach; Katherine L Smollett; Dina Grohmann; Finn Werner
Journal:  J Mol Biol       Date:  2016-04-20       Impact factor: 5.469

Review 8.  Structural biology of bacterial RNA polymerase.

Authors:  Katsuhiko S Murakami
Journal:  Biomolecules       Date:  2015-05-11

9.  The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration.

Authors:  Sung-Hoon Jun; Akira Hirata; Tamotsu Kanai; Thomas J Santangelo; Tadayuki Imanaka; Katsuhiko S Murakami
Journal:  Nat Commun       Date:  2014-10-14       Impact factor: 14.919

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  5 in total

1.  aCPSF1 cooperates with terminator U-tract to dictate archaeal transcription termination efficacy.

Authors:  Jie Li; Lei Yue; Zhihua Li; Wenting Zhang; Bing Zhang; Fangqing Zhao; Xiuzhu Dong
Journal:  Elife       Date:  2021-12-29       Impact factor: 8.140

2.  TrmB Family Transcription Factor as a Thiol-Based Regulator of Oxidative Stress Response.

Authors:  Paula Mondragon; Sungmin Hwang; Lakshmi Kasirajan; Rebecca Oyetoro; Angelina Nasthas; Emily Winters; Ricardo L Couto-Rodriguez; Amy Schmid; Julie A Maupin-Furlow
Journal:  mBio       Date:  2022-07-20       Impact factor: 7.786

3.  Transcribing Genes the Hard Way: In Vitro Reconstitution of Nanoarchaeal RNA Polymerase Reveals Unusual Active Site Properties.

Authors:  Sven Nottebaum; Robert O J Weinzierl
Journal:  Front Mol Biosci       Date:  2021-05-11

4.  Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms.

Authors:  Luis Martinez-Liu; Rafael Hernandez-Guerrero; Nancy Rivera-Gomez; Mario Alberto Martinez-Nuñez; Pedro Escobar-Turriza; Eveline Peeters; Ernesto Perez-Rueda
Journal:  PLoS One       Date:  2021-07-02       Impact factor: 3.240

Review 5.  RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Authors:  Aleksei Agapov; Anna Olina; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  5 in total

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