Literature DB >> 28973467

A transcription network of interlocking positive feedback loops maintains intracellular iron balance in archaea.

Mar Martinez-Pastor1, W Andrew Lancaster2, Peter D Tonner3, Michael W W Adams2, Amy K Schmid1,3,4.   

Abstract

Iron is required for key metabolic processes but is toxic in excess. This circumstance forces organisms across the tree of life to tightly regulate iron homeostasis. In hypersaline lakes dominated by archaeal species, iron levels are extremely low and subject to environmental change; however, mechanisms regulating iron homeostasis in archaea remain unclear. In previous work, we demonstrated that two transcription factors (TFs), Idr1 and Idr2, collaboratively regulate aspects of iron homeostasis in the model species Halobacterium salinarum. Here we show that Idr1 and Idr2 are part of an extended regulatory network of four TFs of the bacterial DtxR family that maintains intracellular iron balance. We demonstrate that each TF directly regulates at least one of the other DtxR TFs at the level of transcription. Dynamical modeling revealed interlocking positive feedback loop architecture, which exhibits bistable or oscillatory network dynamics depending on iron availability. TF knockout mutant phenotypes are consistent with model predictions. Together, our results support that this network regulates iron homeostasis despite variation in extracellular iron levels, consistent with dynamical properties of interlocking feedback architecture in eukaryotes. These results suggest that archaea use bacterial-type TFs in a eukaryotic regulatory network topology to adapt to harsh environments.
© The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28973467      PMCID: PMC5737653          DOI: 10.1093/nar/gkx662

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  65 in total

1.  A major role for nonenzymatic antioxidant processes in the radioresistance of Halobacterium salinarum.

Authors:  Courtney K Robinson; Kim Webb; Amardeep Kaur; Pawel Jaruga; Miral Dizdaroglu; Nitin S Baliga; Allen Place; Jocelyne Diruggiero
Journal:  J Bacteriol       Date:  2011-01-28       Impact factor: 3.490

Review 2.  Pathways of oxidative damage.

Authors:  James A Imlay
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

3.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

Review 4.  Functional specialization within the Fur family of metalloregulators.

Authors:  Jin-Won Lee; John D Helmann
Journal:  Biometals       Date:  2007-01-10       Impact factor: 2.949

5.  DR2539 is a novel DtxR-like regulator of Mn/Fe ion homeostasis and antioxidant enzyme in Deinococcus radiodurans.

Authors:  Huan Chen; Rongrong Wu; Guangzhi Xu; Xu Fang; Xiaoli Qiu; Hongyin Guo; Bing Tian; Yuejin Hua
Journal:  Biochem Biophys Res Commun       Date:  2010-04-22       Impact factor: 3.575

Review 6.  Iron and metal regulation in bacteria.

Authors:  K Hantke
Journal:  Curr Opin Microbiol       Date:  2001-04       Impact factor: 7.934

Review 7.  Manganese complexes: diverse metabolic routes to oxidative stress resistance in prokaryotes and yeast.

Authors:  Valeria C Culotta; Michael J Daly
Journal:  Antioxid Redox Signal       Date:  2013-02-06       Impact factor: 8.401

8.  Robustness from flexibility in the fungal circadian clock.

Authors:  Ozgur E Akman; David A Rand; Paul E Brown; Andrew J Millar
Journal:  BMC Syst Biol       Date:  2010-06-24

9.  Three-dimensional structure of the diphtheria toxin repressor in complex with divalent cation co-repressors.

Authors:  X Qiu; C L Verlinde; S Zhang; M P Schmitt; R K Holmes; W G Hol
Journal:  Structure       Date:  1995-01-15       Impact factor: 5.006

10.  A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq.

Authors:  Elizabeth G Wilbanks; David J Larsen; Russell Y Neches; Andrew I Yao; Chia-Ying Wu; Rachel A S Kjolby; Marc T Facciotti
Journal:  Nucleic Acids Res       Date:  2012-02-09       Impact factor: 16.971

View more
  9 in total

1.  MicroRNA Expression and Correlation with mRNA Levels of Colorectal Cancer-Related Genes.

Authors:  Farahnaz Moghadamnia; Pegah Ghoraeian; Sara Minaeian; Atefeh Talebi; Farnaz Farsi; Abolfazl Akbari
Journal:  J Gastrointest Cancer       Date:  2020-03

Review 2.  Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response.

Authors:  Rylee K Hackley; Amy K Schmid
Journal:  J Mol Biol       Date:  2019-08-19       Impact factor: 5.469

3.  Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.

Authors:  Dmitri Pervouchine; Yaroslav Popov; Andy Berry; Beatrice Borsari; Adam Frankish; Roderic Guigó
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

4.  Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses.

Authors:  Lana J McMillan; Sungmin Hwang; Rawan E Farah; Jin Koh; Sixue Chen; Julie A Maupin-Furlow
Journal:  Environ Microbiol       Date:  2017-12-29       Impact factor: 5.491

5.  Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq.

Authors:  Sebastian Laass; Vivian A Monzon; Jana Kliemt; Matthias Hammelmann; Friedhelm Pfeiffer; Konrad U Förstner; Jörg Soppa
Journal:  PLoS One       Date:  2019-04-30       Impact factor: 3.240

6.  Conserved principles of transcriptional networks controlling metabolic flexibility in archaea.

Authors:  Amy K Schmid
Journal:  Emerg Top Life Sci       Date:  2018-12-14

7.  How to Cope With Heavy Metal Ions: Cellular and Proteome-Level Stress Response to Divalent Copper and Nickel in Halobacterium salinarum R1 Planktonic and Biofilm Cells.

Authors:  Sabrina Völkel; Sascha Hein; Nathalie Benker; Felicitas Pfeifer; Christof Lenz; Gerald Losensky
Journal:  Front Microbiol       Date:  2020-01-17       Impact factor: 5.640

8.  An archaeal histone-like protein regulates gene expression in response to salt stress.

Authors:  Saaz Sakrikar; Amy K Schmid
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

9.  Copy number variation is associated with gene expression change in archaea.

Authors:  Keely A Dulmage; Cynthia L Darnell; Angie Vreugdenhil; Amy K Schmid
Journal:  Microb Genom       Date:  2018-08-24
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.